Prochlorococcus marinus MIT 9313: PMT_1083
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Entry
PMT_1083 CDS
T00143
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmt
Prochlorococcus marinus MIT 9313
Pathway
pmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMT_1083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmt03019
]
PMT_1083
03009 Ribosome biogenesis [BR:
pmt03009
]
PMT_1083
Enzymes [BR:
pmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMT_1083
Messenger RNA biogenesis [BR:
pmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMT_1083
Ribosome biogenesis [BR:
pmt03009
]
Prokaryotic type
rRNA helicases
PMT_1083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Cas3-like_C_2
B12-binding
AAA_22
UTP25_NTPase-like
DUF7032
AAA_19
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
CAE21258
UniProt:
Q7V6R3
LinkDB
All DBs
Position
complement(1169058..1170965)
Genome browser
AA seq
635 aa
AA seq
DB search
MGRCLPDLKDQSGRQRLLSMTHTKAHEDVSCSPEKSASEISSTSADDGLTTVAEATNQNN
SGDGSVSVAAEACEETEATELVSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLG
RDLVGQAQTGTGKTAAFALPLIERLHDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPH
LKVLAVYGGADFRSQINTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLR
MGFIDDVEWILEQLPEERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQR
CITLQNSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQ
RERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSG
EAILFVNPRERRFVGGFERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSE
ETALLQELIQRVVQELSLSPEQLALAALEFAVGPGPILVQADEGWLQQSTQRNRRNDRHE
SRGGSGRRPERSSRPPEDHMERFRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIFE
SHSLVDLPKGMPEDVFKDLKRLKVMNRELHIQRAS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggggcgttgtctgcctgatttaaaggatcaatcaggtagacaacgccttctctcgatg
acccatacaaaagcgcacgaggatgtctcgtgctcccctgaaaagagtgcgtctgagatc
tcttcaacgagcgcagatgatggtttaaccactgtggctgaggccaccaatcaaaacaat
tcaggcgatggctcggtctcagtagccgctgaggcctgtgaagagactgaagcgacagag
ttagtttccgaattcgattgttttggctttagcgagccgttgctcaagacccttgccgaa
aagggttataagcaaccctccccaattcagaaagctgctattccagaattgatgctgggt
cgtgatctagttggtcaggctcagactggaacaggcaaaacagccgcttttgcgttgccc
ctgatcgagcggcttcatgatcatggcagtcgtccccaagtgttggtgcttgccccgacc
cgggagttggcgatgcaggtcgcggattcgttccgtgcttatgccgttggccatccgcat
ctcaaagttttggcggtatatggcggagccgatttccgctctcagatcaataccctcaag
cgtggcgtggatgttgtggtaggcaccccgggccgcttgatggatcacatgcggcagggc
actctcgacacctctggtttgaggtgtttggtgcttgacgaagccgatgaaatgctgcgt
atgggtttcatcgatgatgtcgaatggatcttggagcagttgcctgaggagcgccagatg
gtgttgttttcggcaacgatgccatcagagatccgtcgactttcgaagcgttacctacac
gaaccagcagagatcacgatcaagagccgtgatcaggaggctcgtctcatccgtcagcga
tgtatcactctccagaacagccacaaacttgaagcccttagaagggttcttgaggctttc
actggtgagggagtgattatttttgcccgcaccaaggtgatcactctcaccgttgctgag
gcactagaagccgctggacacgatgttgccgtactgaacggggatgtccctcaaaaccaa
cgggaacgaacggttgaacgtttgcgcaaaggcagcgtgaatatcttggttgctactgat
gttgccgctcgaggtctagatgtcgatcgcatcagcctggtgatcaactacgacatcccc
tttgatagcgaagcctatgtgcatcgcatcggacgtaccggccgggctggccgcagtgga
gaggccattttgttcgtgaaccctcgggaacgtcgctttgtgggcggctttgaacgtgct
gtaggtcaacccatcgaaccgatggatatccccaacaatgcagcgattaaccagagtcgt
cttgatcgccttcgtcaacgtctcactactgccgctaagacggagagagataactccgag
gagacagcccttctccaggagctaatccagcgtgttgtgcaggagctcagcctcagtcca
gagcaattggctctagcagcattagagtttgctgttggcccaggcccaatcttggtgcag
gctgatgagggttggttgcagcagtcaactcagcgaaaccgtcgcaacgatcgtcacgaa
agtcgtggaggctctggccgaaggcctgagcgttcatcgagaccgccggaagatcacatg
gagcgctttcgtgtggaagtcggtcatcgcgatcgtgtcaagcctggcaatctggttggt
gccatcgccaatgaatccgggcttgaaggacggatgattggtcgcattcagatttttgag
tcgcacagtcttgtggatcttcccaaaggaatgcctgaggatgtttttaaagatctaaaa
cgtctcaaggtgatgaatcgagagttgcatatccagcgtgcttcttaa
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