Prochlorococcus marinus MIT 9313: PMT_1505
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Entry
PMT_1505 CDS
T00143
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmt
Prochlorococcus marinus MIT 9313
Pathway
pmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMT_1505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmt03021
]
PMT_1505
03400 DNA repair and recombination proteins [BR:
pmt03400
]
PMT_1505
Enzymes [BR:
pmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMT_1505
Transcription machinery [BR:
pmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMT_1505
DNA repair and recombination proteins [BR:
pmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMT_1505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CAE21680
UniProt:
Q7V5P3
LinkDB
All DBs
Position
complement(1587132..1591256)
Genome browser
AA seq
1374 aa
AA seq
DB search
MTSTSPKSRKPSTKTTKSKSKSKSKSKAAKAAAAGASPALARTPPQFRNRVIDKKALKQL
VAWAYKTHGTAVTASMADNLKDLGFRYATQAAVSISVEDLKVPEAKQDLLGQAEAQITAT
EECYRLGEITEVERHTKVIDTWTETNERLVDAVKKNFNQNDPLNSVWMMANSGARGNMSQ
VRQLVGMRGLMANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYL
TRRLVDVAQDVIVREDDCGTTRGIIVKAEDGGFGSRLVGRLTAEQVVNVDGEILAERNTE
IDPPLSKRFEKAAITEVMVRSPLTCEANRSVCRKCYGWALAHNELADLGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVSTAETGVVRSTVAGTVEFGPKARVRGYRTPHGLEAQQSEVDFT
LTVKPSGKGRAQRIDITTGSLLFVSDGQEIEADVTVVQIAAVAVKKSVEKATKDVICDLA
GQVRYEQVIQPREVKDRQGNITLKAQRLGRLWVLAGDVYNLPPNAEPVVQGNVKVERGQV
LAEASQASEFGGEVRLRDSIGDSREVQIVTTSMTMKDFKLLGESTHSGELWHLEAKDGTR
YRLNTIPGSKIGNGEVVAELADDRFRTQTGGLVRFAPGLAIKKARSAKNGFEVNKGGTLL
WIPQETHEINKDISLLMIEDGQWIEAGTEVVKDIFSQTAGIVTVTQKNDILREIIVRSGS
FHLCTETKALERFTGDGQIVNPGETIAKGINSEAMVFVQTVDTPEGTGLLLRPMEEYTIP
NEAQLPELTHVKQPKGPHLGIKATQRLAFKDGELIKSVEGVELLKTQLILETFDTTPQMT
VDVEAVRDKRAKTIERLRLVILESILVRRDTISDSSHGSTHTELQIEDGQSVKASDVVAT
TQILCKQEGIAQLPVVQEGDPVRRLIVERDEDTITVTTNGSPLVEVGQRLVDGDSLAKDE
PSSCCGEVEEVDGKAITLRLGRPYMVSPDSVLHVRDGDLVQRGDGLALLVFERQKTGDIV
QGLPRIEELLEARRPRESAVLCKKPGTVEIKQGEDDESITVTVIEADDAIGEYPILLGRN
VMVSNGQQVHAGELLTDGPINPHELLDCFFEDLRGRKPLMDAAQEAIAKLQHRLVTEVQN
VYKSQGVSIDDKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEDTNQAMAITGGAP
SEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPA
GTGFSGFQEELRAEAGPHPDILAEDPAGYRRMQNLRPDYTVDMPAAPAASSTAVLADPSD
ADLEATRSRHGIDPAASNFAAFVRPTGENELEEEQLPDPSALEGLQQEGLLTEE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaacctccccgaaatcccgcaagccttcgaccaagaccaccaagtccaagtcc
aagtcgaagtccaagtccaaggccgcaaaggctgctgcggcaggcgcttcgccagcactg
gcgaggaccccaccgcagtttcgtaaccgggttatcgataagaaggccctaaagcaactg
gtggcatgggcttacaagacacacggcaccgctgtaaccgcttccatggcggacaatctc
aaggaccttggctttcgctacgccactcaggctgccgtgtcgatttccgtggaagacctc
aaggtgcctgaggccaagcaagacttgcttggccaggcagaggctcagatcacggccacc
gaggagtgttatcgccttggtgaaatcacagaggttgagcgtcataccaaggtgattgat
acctggacagaaaccaatgagcgtttggttgatgccgtcaagaagaatttcaatcagaac
gacccgctgaactcggtctggatgatggccaactctggggctcgtggaaacatgtctcag
gttcgccagcttgttggtatgcgtggcctgatggccaatccgcagggggagattattgat
ttgccgattcgcaccaatttccgtgagggtctaacggttactgagtacgtgatctcctct
tacggcgcacgtaagggtctcgtcgatacagcgttgcgaacagccgattccggttatctc
acgcggcgtctggtggatgttgctcaggatgtgatcgttcgtgaggatgattgcggcacc
actaggggcatcattgtgaaggcggaagacggtggttttggtagccgtcttgttggtcgc
ctcactgcagagcaagtcgtcaatgttgacggcgaaattcttgctgaacgcaatacagaa
atcgatccaccgctttctaagcgtttcgaaaaggcagccatcactgaggtgatggtgcgc
tcaccgcttacttgtgaggccaatcgttccgtatgtaggaagtgttatgggtgggcattg
gctcataacgaattagccgatctcggcgaagccgtcggcattattgctgctcagtccatc
ggtgaaccggggacgcagctcaccatgcgaactttccataccggtggtgtgtctaccgct
gagactggcgtggttcgttccactgttgctggcacagttgagtttggtcccaaggctcgt
gtgcgtggttaccgcacaccccatggtctagaggctcagcagtctgaagtggacttcact
ctcactgtgaagccttcaggcaaggggcgtgcacagaggatcgatatcaccaccggatct
ttgctgttcgttagtgatggtcaggagatcgaggcagacgtgactgttgttcagatcgcg
gctgttgcggtgaaaaagagcgtggagaaggccactaaagacgtaatttgtgacctggct
ggtcaggttcgttatgagcaggttattcagcccagggaagttaaagaccgtcagggaaat
atcactctgaaggcgcagcgtttagggagactttgggtgcttgctggggatgtctacaac
cttccccccaatgccgagcctgtagtccagggcaatgtcaaagtcgaacgtggtcaggtg
ttggcggaggccagccaggccagcgagtttggaggtgaggtgcgtctgcgcgattcgatc
ggggattctcgcgaggtgcagatcgtgaccacctcgatgacgatgaaggacttcaagctg
ctcggagagtccacgcattcaggggaactttggcatctggaggcaaaagacggtacccgt
tatcgcttaaacaccattccgggaagcaagattggcaatggtgaagtggtggctgagttg
gctgatgaccgcttccgcactcagaccggtggtctggtgcgttttgcccctggtctggcg
atcaagaaggctcgctcagccaagaatggctttgaggtgaataagggtggcaccttgctt
tggatccctcaggagacacatgagatcaacaaggacatttccttgttgatgatcgaggac
ggccagtggattgaggccgggactgaggttgtcaaggacatcttcagccagaccgccggg
atcgtaacggtgactcagaagaacgacatcctgcgcgaaatcatcgttcgcagtggcagc
ttccacctttgtactgaaaccaaggccttagagcgtttcacaggtgatggccagatcgtg
aacccaggcgagacgattgccaagggcatcaattctgaagccatggtctttgtgcagacc
gtggatacacctgaggggactggtctgttgctaagacctatggaggaatacaccatccca
aatgaggcacaactccctgagttgactcatgtcaagcagccgaagggccctcatctgggg
attaaggccacccagcgactcgcctttaaggatggagagctgatcaaatcggttgagggc
gtagagctactcaaaactcaactcattcttgagacgtttgacaccactcctcagatgact
gtggatgtagaggctgtgcgtgataagcgagctaagaccatcgaaagattgcgtttggtg
attctcgagagcatccttgtgcgtcgcgacacaatctccgattcaagccatggctccact
cacaccgagttgcagattgaggacggccagtcggttaaggccagtgatgtggttgcgaca
actcagatcctttgtaagcaagaggggatcgcccagttgcctgttgtccaggagggtgac
cctgtgcggcgtttgattgttgagcgtgatgaagacaccattacggtgacgaccaatggc
agtcccctcgtggaggtaggccagcgattggtcgatggcgactcgctagcaaaagatgag
ccgtctagttgttgcggagaggtagaggaggttgatggaaaagcaatcaccttgcgcctt
ggacgcccttacatggtgtctccagattctgtattgcatgttcgcgatggcgatttggtg
cagcggggtgatggtttggcgttgttggtgtttgaacgtcagaagacaggagacattgtt
cagggtttgccgcggattgaggagttgctcgaagctcgtcgcccaagggaatctgctgtg
ctctgtaagaagccaggcactgtggagatcaagcaaggagaagacgatgaatcaatcacg
gtgactgtgattgaggcagatgatgctattggcgaatacccgattcttctaggtcgtaac
gtcatggtcagcaatgggcagcaggtccatgctggagaactgctcactgatggtccgatt
aaccctcacgagctactcgattgctttttcgaggatttacgtgggcgcaagccgttgatg
gatgctgcacaagaggcgatcgccaaactccagcaccgtttggttactgaggttcagaat
gtctacaagtcacagggtgtctcgattgacgacaaacatattgaggtgattgtccgccag
atgactagcaaggtgcggattgaggatgctggtgataccactttgctgccaggggagttg
atcgaattgcgtcaggtggaggacaccaatcaggctatggcgatcactggtggagcccct
tctgagttcacacctgttctgctgggaattacgaaggcgtctctgaacaccgacagcttc
atctcggcggcttctttccaagagaccacacgagtgctcactgaagccgcaatcgagggt
aagagcgattggctacgtggtctcaaagagaatgtgatcatcggtcggttgattcccgcc
ggcactggcttcagtggcttccaggaagagttgcgagccgaggcggggcctcatccggac
atcctcgccgaggaccctgctggctatcgccgaatgcagaacttgcgtccggattacacc
gtggacatgcctgcagctcctgcggccagttcgactgctgtgttggctgaccccagtgac
gctgatttggaggccacacgcagtcgtcatgggatcgatccagcggctagcaacttcgct
gcttttgttcgtcctactggtgagaatgaactcgaggaggaacagctgccagatccatcc
gctctcgagggtcttcagcaggaggggctgctcactgaggagtga
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integrated database retrieval system
