Podarcis muralis (common wall lizard): 114581454
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Entry
114581454 CDS
T06059
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114581454 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmua03041
]
114581454 (DHX8)
Enzymes [BR:
pmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114581454 (DHX8)
Spliceosome [BR:
pmua03041
]
Complex C
Other components
Step II factors
114581454 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
PhoH
ABC_tran
TsaE
Sigma54_activ_2
OB_RRP5_4th
Cas3-like_C_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
114581454
NCBI-ProteinID:
XP_028557430
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All DBs
Position
13:11349670..11390434
Genome browser
AA seq
1186 aa
AA seq
DB search
MAEPVDELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVINLAERNTTFDAFKAALVKNG
AEFTDSLISNLLRLIQTMRPPAKPSTSKEAVKPKTEKEKYKELFPALCRPDNPIVRTMLD
EDDVKVAADALKELEALMPTAERQEKHRSSEDHSKRRRRSRSRSRGRDQKRKRKSPSRSR
TRERNKGKSRYRSRSRSPSWDRKEREKPAEKSNERWRDKHVDRPPPEEPSIGDIYNGKVT
SIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSKTSL
SMKDVDQDTGEDLNPNRRRNLVGESEEAAMRNPDRPTHLSLVSAPEVEDDTLERKRLTRI
SDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTK
QSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLP
DVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIYRLKDQL
IQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEF
GCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHT
DVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPET
DYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYS
ALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQL
VVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKA
MGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLI
MSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKN
NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRN
AAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV
EFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcccgtggacgagctcgctaagctcgagtacctgtccctggtctccaaagtc
tgcacggagctcgacaaccacttgggcatcaacgacaaggatctggctgaatttgtgata
aacctcgcagagagaaatacaacctttgatgcattcaaggcagccttggtgaagaatggt
gccgaatttacagattccctcattagcaacctgctgcgtcttatacagacgatgcgaccg
cctgcaaaaccttccactagcaaagaggctgtaaaaccgaaaaccgaaaaggaaaagtac
aaggagttgttcccagccctctgtagaccagacaatcccattgtcaggacaatgttggat
gaagatgatgtgaaggtcgctgccgatgccctcaaggaactggaagctttgatgccaact
gcagaaaggcaggagaagcaccgaagcagtgaggaccacagcaagagaaggcggaggagc
cgcagccgcagcagaggtcgggaccagaagcggaagcggaagtcgccctctcgttcccgg
acgagggagcggaataagggaaagtccaggtaccgttccaggagcagaagccccagctgg
gaccggaaggagcgggagaagcctgcagagaagagcaacgagcgatggcgggataagcac
gtggaccgacccccaccagaggagccttccatcggggacatctacaacggcaaagtcacc
agcatcatgcagtttggctgctttgtccagcttgaaggactcaggaagcgctgggaagga
cttgtccacatctcagagctgcgccgcgaggggcgtgttgctaacgtggccgacgtggtg
agcaaagggcagagggtcaaagtcaaagttctgtccttcactggctctaaaaccagcctc
agcatgaaggatgtagatcaagacacaggggaggatttgaacccaaacagacgtcggaac
ctcgtcggggagtctgaggaggcagccatgagaaacccagaccggccaacccacctgtcc
ttggtcagcgctccagaggtagaggacgatacgttggaacggaagcgcctcacccgcatt
tctgaccctgagaaatgggaaatcaagcagatgattgctgccaacgtgctttccaaggag
gagttccctgactttgacgaggaaacggggatcctgccaaaggttgacgatgaagaagac
gaggacctggaaatcgaactggtagaggaggagccgccgttcctgcgagggcacaccaag
cagagcatggacatgagccccatcaagattgtgaagaaccctgacggctccctgtctcag
gctgccatgatgcagagtgcgcttgcgaaagagaggcgagagctgaagcaagcacagagg
gaggcagagatggactccatccccatgggactcaacaaacactgggtggatcccctccca
gacgtggatgggagacaaatcgctgccaacatgcgagggattggcatgatgccaaacgac
atcccagagtggaagaaacacgccttcggaggcaataaagcctcttacgggaaaaaaact
cagctgtcgatcattgagcagagggaaagtctcccgatttaccggctgaaggatcagctc
attcaggctgttcacgataaccagattctgatcgtcattggggagacaggctccgggaaa
acgacgcagatcacgcagtaccttgctgaggctggctacacctctcgcgggaagattggc
tgcacccagcctcgccgagtggctgccatgtccgtggccaagagggtatcggaggagttc
ggttgctgcctggggcaagaggttggctacaccatccggtttgaggactgtaccagtcct
gagacggtgatcaagtatatgacagacgggatgttgctgcgagagtgcctgatcgacccg
gatctgacgcagtatgccatcatcatgttggatgaagcccacgagcgcaccatacacacc
gatgtgctgtttggtctcctgaaaaagacggttcagaagaggcaagacatgaagttgata
gtgacgtcggccaccttggatgcagttaagttctcccagtacttctacgaggctcccatc
tttaccatcccaggcaggacgtacccggtggagattctctatactaaggagccagagaca
gattacctggatgccagcctgatcacagtcatgcagatccacttgacggagccaccagga
gacatcctggtgtttttgactggccaggaggagatcgacacggcctgcgagatcctctat
gagcgaatgaaatccctgggtcccgacgtccctgagctgatcatcttgcccgtctactcg
gccctgcctagtgagatgcagacacgcatctttgacccagctcccccagggagtcgaaag
gtggtcattgcaacgaacatcgctgaaacttcgctcacaattgacggcatctattatgtg
gtggaccccgggtttgtgaagcagaaagtatacaactcaaagacaggaattgaccagctg
gttgtgacacctatttctcaggcccaagccaagcagcgagctgggagggctgggagaacc
gggccaggcaagtgctaccggctgtacacagagcgggcctaccgcgacgagatgctcacc
accaacgtgcctgagatccagaggaccaacttggccagcactgtgctgtcccttaaggct
atgggaatcaacgacctgctctcctttgatttcatggatgctccgccaatggaaactcta
atcaccgcaatggagcagctgtacactctgggtgccctggatgacgaggggctgctcacc
cgactgggacgccggatggccgagttccccctggagcccatgttgtgcaagatgctcatc
atgtcagtgcatctgggatgcagcgaggaaatgctcaccatcgtctccatgctgtcggtg
cagaacgtcttctaccgacccaaggacaagcaagctcttgctgaccagaagaaagccaag
tttcaccagacggaaggggaccacctcacgcttctggctgtgtacaactcctggaagaac
aacaagttctccaatccctggtgttatgagaacttcatccaagcccgatcgctgcgccgt
gcccaggatattcgcaaacagatgttgggcatcatggataggcacaagttggatgtagtg
tcatgtggaaaagccaccgtacgcgtccagaaagccatttgcagcggtttcttccggaat
gccgccaagaaggatccccaagaaggctaccggaccttgattgaccagcaggtcgtctac
atccacccctcaagtgccctcttcaaccgccagcctgaatgggtggtgtatcatgagttg
gtgctcaccactaaagagtatatgcgggaggtcaccaccattgatccccgctggctggtg
gagttcgcccctgccttcttcaaggtctctgaccccacaaaactcagcaagcagaagaaa
cagcagcgcctggagcccctttacaaccgctacgaagagcccaacgcctggagaatatcg
cgagccttcaggcgccggtga
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