Podarcis muralis (common wall lizard): 114581809
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Entry
114581809 CDS
T06059
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03030
DNA replication
pmua03410
Base excision repair
pmua03420
Nucleotide excision repair
pmua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114581809 (LIG1)
03410 Base excision repair
114581809 (LIG1)
03420 Nucleotide excision repair
114581809 (LIG1)
03430 Mismatch repair
114581809 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmua03032
]
114581809 (LIG1)
03400 DNA repair and recombination proteins [BR:
pmua03400
]
114581809 (LIG1)
Enzymes [BR:
pmua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114581809 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
114581809 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114581809 (LIG1)
DNA replication proteins [BR:
pmua03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114581809 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114581809 (LIG1)
DNA repair and recombination proteins [BR:
pmua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114581809 (LIG1)
NER (nucleotide excision repair)
Other NER factors
114581809 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
114581809 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
114581809
NCBI-ProteinID:
XP_028558264
LinkDB
All DBs
Position
13:31938065..31963027
Genome browser
AA seq
972 aa
AA seq
DB search
MQSCTMQSTIRSFFQPLAQTKPGKEAAEKNHLEEEPAPKRKLVDSEPQVNGTTHHANSPV
NTAAQKNTSVIKSEEDSGKPKQKDTEADNNKQVSDCVPEQKVPAQSTSQSTSPATSNSPS
PTYIPRRRTARKQLPKRKAEEEVSNHDSIQQEHCTKRWKGDDEDGEGTKGEPDEESIKTE
EMKDDNSDVVQVKIEQDAEEETTPAPPKPSSKPISNFFGTKGEPDEGSIKTEEMKDDNSE
VVQVKIEQDAEEETTPAPPKPSSKPISNFFAPRKASVKTEKKEVPVIGGSMSAPKSLNGH
ESNSKADCSAKPSLTLEPTNYNPMKGNYHPVNDACWGPGQRVPYLAVARTFEKIEEESAR
LKIIETLSNLFRSVIALSPEDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGRN
LDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLDAASVFGKLQAIGRMTGSSSMNKKID
VIKTLFVACRYSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPGVLDASK
GKSAEVRKNWLDERALIVKQAFCELPNYDTIVPVLLEHGVESLPHHCKITPGIPLKPMLA
HPTRGIGEILKRFEEAAFTCEYKYDGERAQIHILENGEVHVYSRNQENNTTKYPDIVSRI
PKVKKSTVQSCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVEATEIRVQVCVYAFDMLFL
NGQSLVRKPLSERRALLHDSFNEVEGQFLFTTSMDTSNTDEIADFLECSIKDSCEGLMVK
TLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGVYGCFLLACYDE
DSEEFQSICKIGCGFTDYDLEEFHTSLKDYVIPQPRSYYRWGGTAEPDHWLEAQHVWEVR
CADLSISPVHKAAAGLVDEEKGISLRFPRFVRIRDDKKPEEATASTQVAELYRRQQQILN
QQSVEKGDDDFY
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctgcacaatgcaaagcactataagatcattcttccagcccctggcacaaaca
aagcctggaaaagaagcagcagagaagaatcacctggaagaggagcctgcccccaaaagg
aaacttgtagattctgaaccacaggtaaatggtacaacacaccatgcaaattccccagtg
aatactgcagcccaaaaaaacacctccgttattaaaagtgaagaggattctgggaaacca
aaacaaaaggatacagaggcagataataacaagcaggtttctgactgtgttcctgagcaa
aaggttcctgcgcagagcacctcacaaagcaccagcccagctacctctaattctccctca
cccacctacattccccggcgtagaacagcacgcaagcagctccctaaacgtaaagcagag
gaagaagtcagtaaccatgatagcatccagcaggaacattgtaccaaaagatggaaagga
gatgatgaggatggagagggcacaaaaggggagccagatgaggagtccatcaagacagaa
gaaatgaaagatgataattcagatgtggtgcaggtaaaaattgagcaagatgcagaggaa
gagacaacaccagcaccccctaagccatccagcaagcccatctctaatttttttggcaca
aaaggggagccagatgaggggtccatcaagacagaagaaatgaaagatgataattcagaa
gtggtgcaggtaaaaattgagcaagatgcagaggaagagacaacaccagcaccccctaag
ccatccagcaagcccatctctaatttttttgcccctcggaaagcctctgtgaagacagag
aaaaaagaagtgccggtgataggaggaagcatgtctgcaccaaagagccttaatggccat
gaatccaatagcaaagctgactgttctgccaagccatctcttacacttgagcctacaaat
tacaacccaatgaagggaaattatcatcctgtaaacgatgcttgttggggccctggccag
agggtaccatacctggcagtagctcgtacatttgagaagattgaggaggaatctgcccgg
ttgaaaattatagagaccctgagcaatcttttccgctctgtaattgctctgtctccagag
gacttgctgccctgtgtctacctctgtctcaaccggttaggcccagcatatgagggccta
gagttgggcattggtaaaaccatcctcatgaaagctttggctcaggccacaggtcgtaat
ttggaccagatcaaggcagaagcagcagaaaagggagacctgggtttggttgctgagagt
agccgcactacacagggtaccatgtttgccccacccaagcttgatgctgcttctgtcttt
ggcaaacttcaggccattgggcgcatgacaggaagctcttcaatgaacaagaagattgac
gttatcaagactttgtttgttgcttgtcgctattcagaggctcgctatgttgctcggtca
ctagaaggaaaactgaggattgggttagcagagcagtctgtcctgtctgctttggcccag
gcagcatcactcactcctccaggacaaaaatttcccccaggagttttggatgcttcaaag
ggcaagtctgcagaagtgcgcaaaaactggttggacgagagagcattgattgttaaacag
gccttctgtgagctgccaaattatgatactattgtgcctgtccttctggaacatggtgtg
gagagtctgcctcatcactgcaagatcacaccagggattccactgaagcccatgctggct
cacccaacaaggggaattggagagatattaaagcgatttgaagaggcagctttcacctgt
gaatacaaatacgatggggagcgagcacagatacacatcctggagaatggagaggtgcac
gtctatagccggaaccaagagaacaacacaacaaagtaccccgacattgttagccgtatc
cccaaggtaaaaaagagcactgtgcaatcatgcattttggatgcagaagctgtggcctgg
gatcctgattccaaacagatccagccattccaggtactcaccacccgcaagcgcaaggat
gtagaggccacagagatccgagtgcaggtttgtgtgtatgcattcgacatgctcttcctt
aatggacagtctctagtccggaaacccctatctgagcgccgggctttgcttcatgattcc
ttcaatgaagttgaaggccagttcctgtttacaacctccatggacactagtaacactgat
gagatagcagacttcctggaatgctccatcaaagattcatgcgaggggctaatggtgaaa
acgctggaagtggatgccacatacgaaattgcaaagagatctcacaactggctgaagctt
aagaaagattatctggagggtgttggcgacaccttggaccttgtggtgatcggtgcctat
ctgggcaagggcaaacgtgcaggcgtatatggttgtttcctcttggcttgctatgatgag
gatagcgaggagttccagagcatctgcaagatcggctgtggattcacagattacgaccta
gaagaattccacacctctctcaaggactatgtgattccacagccacgatcctactaccgc
tggggtggaacagctgagcctgaccactggctagaggctcagcatgtctgggaggtgagg
tgtgctgacttatccatttctccagtccacaaagcagcagctggtttggttgatgaagaa
aagggcatctccctccgctttcccagattcgtacgcatccgtgatgataagaaaccagag
gaagccactgccagtactcaggtggctgagttgtaccggaggcagcagcagattctgaat
cagcaatcagtggaaaaaggagatgatgatttctactaa
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