Podarcis muralis (common wall lizard): 114589031
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Entry
114589031 CDS
T06059
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pmua
Podarcis muralis (common wall lizard)
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmua03021
]
114589031
Enzymes [BR:
pmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114589031
5.6.2.5 RNA 5'-3' helicase
114589031
Transcription machinery [BR:
pmua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114589031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
AAA_30
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
114589031
NCBI-ProteinID:
XP_028570796
LinkDB
All DBs
Position
Z:14508132..14579359
Genome browser
AA seq
2347 aa
AA seq
DB search
METCCWCTPIESVITTLKNYAHSLLPPERFAAANEDLCYCLECVDEYHKVKDDLPCLHEI
LWNLETTRLIAHFEKYLPKEDSNSLDCDERGKVQCLDSDIEKKLRVPLLEILKYPYLLLH
KRLSMLFVDAVCKMEAINYPCQVLGKHPGVYLLMVHPNETIRRWAIMTAKSLGKVDRDDY
YDIQEVLNCLLRVIELNLFENAYVYSPTTVEKGNLILLPDHLYDITSYKNYWLGICMVLL
VLDEQAMDSLLLGPNKQNDFMQCLINTLKEDSDDESNSPFWPALHCFMVILDKLGSKVWG
QHIDPSEAFQTINSSVSYNKEIENIRQRCKRTRSVPLSDCEDEMVTCSQLVYDYRLEKPQ
KVTGHKSAACPNYFPDLYEDMKTLIDAFQADFGQDIQLHSSTFLWLIPFIHSLMGLRELG
IGYSVQVMSHLCLKTDVSENSAESYDKVSQFFIWVLVIVIQLHLKKKCLSSLWVSAEKWV
RTVVAWAKLPRAVFMAGIERRAARSCLISTATSPSLETESVQSFCMKLIRNILKEGLHDV
KTPVCKQFFLELNLLLRNRMNLELSPKQTQELQSTLKHIIRTMWMKSGPSSPIVESFPIG
VNERQEDMHPVNMCNEHPPHLSAARKDEVCQEGQVQEGSMLANRYTYVQKTMSCHQTLGI
DIKVENIWSGVERPRASSPLMTKNDDSSDALEKSVDQNDLTSQRKPLRPLIPDFKERLRH
LFDKYRISTMLESKTKEEQSVRDQRKSQEGPKSDIVAGSAGNTSDPLLCKSGAGSSKSFL
SLSACMKNKCKDTALGFETGQSGSEEGSSDDMKETVPLDIVVRNQRNEFEAAVAVTSTST
ATDPQINIVFNKGTFTSFPIDSRQESSKKGMGSVQSQSSSEDCPSKAAKGPSYTIIISDS
SEEDENQGNTSRESRNDTTCVCHEKQSSAQGQEPMNSSPTNAEHESQLFEFESEAEIYSE
WQDSQTNEEPTEEENLLVETDNGHRATDLEINYWGYESNPHWFNATEEAKEDHVQNSETK
TKPHTPAQKVNISSRNAMCCSTSTGMDAGCSRHIDPSAPTAPSETASAVKESTIQPKKAP
PQAEPARSTPAVVPPAKVHHFPPPTSLTENLGLSKKVRRAAELSQRTQDSLAELRRHGEI
AGRVDVAQKRTSQLINASHLTTKNRKMLSCQELQFYRQARPKEREKGQHTQRGNPSSSIL
EATASKTNPLTSTDSSSSSCDEDVALKEGEPQLNENIEDDNLFLTQSDPVDMELCSQIES
GSNPTHMEVSVSASPLQDANEICKEAGSKRAAEAEAHGASCSAGGPQDNASAKTFAPPRL
STMKIFSVSSRNTNLTKELESIPKPPAVPKSKSYSFMPPTSKGNGLQSQIPMPNSILQPQ
NSNNVPQLLNVQNNSNVYTGGVLPACRPVSWHEMNPRFTQANSVNAQQRSPAIFSREILK
WNYDMFAQFSQFGPPAYLLQSVMTSVPATFNNYNDYFNTFFPLMMLNTFETVAQDWIENQ
KWKDKRNFHLTLLNFSLDTNEADFTANLSESNLGRQYPKQDDFVVLTVYEKQAFHSNPGK
AESHPVCHVGYVTRFYFKYKEQDVVNLSVKTQGNLSRIEKKVMCLTICSLATMQRMFKAL
LLLNRSPLAKAIINTEYTDFSLMGSNVDSENSSSYMREFNEDQRTAIETAYALVTQSPSL
PKICLIHGPPGSGKSKTILGLLYCIFIERPGKENSAQSKIKNRVLLCAPSNAAVDDLMKK
IILMFKGKCQDSSSPLGNCGDINLVRLGQENSISRDVWKFSLDAQVDHEISKAALGRHQD
ICRRKEDLDRQLDIICRQRAIAKTQSADQLQLLDNEICRLGEERKRLTVQLKKDCGRSQG
DLKANIILKSHIICCTLSTSGNSMLASAFRRQGCDPLSCVIVDEAAQSCEMETLIPLTHG
CKKLVLVGDPKQLPPTVRSMRAEEYGYGQSLMERLCRQLDAQLQNKVIDRLPVLRLTTQY
RMHPEICLFPSNYVYNCALKTDMRTEENRFSKDWPFLPYLLFDVLDAHEIRETDSFVNLQ
EVKLVVELITLITKTKKSISYRNIGIITPYSAQKRRILLELEKEFGREEKGVAEVDTVDG
FQGREKDCIIVSCVRAQSTQGSIGFLKSLQRLNVTLTRAKYSLFILGHLKTLMENKDWNA
LIQDAQKRGSIIKTTSKTMYNSIPCYATGAKMILKPMSVQQRLARAAIGQVTTVATSGEA
PAQHPQPSSSGAPAPAPGPAPGSNKESPAQAQPSLVVPRFGQVTMAALMNEVPVQHPQPS
SSAAPAPRNSGAPLMPASGHSSSSNPQATSQNRPRDPRLAKRAEEGVRRSPTESHSPTDP
KRQKTTE
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atggagacgtgctgttggtgcacccctattgaatcggttatcaccaccttaaagaactat
gcccattctttactgcctccagaaagatttgctgcagccaacgaagacctctgttactgt
ttggagtgtgtggatgagtatcataaagtgaaggatgatttgccatgcttacatgagatc
ctgtggaatcttgaaaccactcgtcttattgcccattttgagaaatatttgccgaaggaa
gacagcaattcgctggactgtgatgagaggggaaaggtgcaatgcctggattctgacatc
gagaaaaaacttagagtgccattgttggaaatactgaaatacccctacctgttgcttcat
aaacgcctcagcatgctgtttgtggatgctgtttgcaaaatggaggcaatcaactacccc
tgccaggtgcttgggaaacacccaggggtctatttgctcatggtacaccctaatgaaacg
atccgtcgatgggccattatgacagccaagagtctgggaaaggtggacagggacgattac
tatgacatacaggaagtgctaaattgcttgctcagagttatagagctgaacctctttgaa
aacgcttatgtttatagccccacaacagttgagaagggtaatctcatcttgttgcctgac
cacctgtacgatattaccagttacaaaaactactggctaggcatatgtatggtgctgctg
gtgctggatgagcaagccatggattcattgttgcttggcccaaacaaacagaacgacttt
atgcaatgcctaataaatacccttaaggaagactcggatgatgaaagtaacagtcccttc
tggcctgcactccactgcttcatggtgatcctggataagcttgggtccaaagtgtggggg
cagcacattgatccaagtgaggcatttcaaactattaacagcagtgtgagttacaataaa
gaaatagagaatattcgccaaaggtgcaagaggactagatctgtgccgctatcagattgt
gaagatgaaatggtcacctgcagccaactggtgtatgattaccgcctagaaaagccacag
aaggttaccgggcataaatctgctgcttgtcctaattacttccctgacttgtatgaagat
atgaaaacattaattgatgcattccaggctgactttggccaagacatacagttgcacagc
agcacttttctatggcttatccctttcatccactcccttatgggcctcagggagctgggg
attggctacagcgtacaggttatgagccacctgtgtttaaaaacggatgtctctgagaac
tctgctgaatcctatgacaaagtatctcagttctttatttgggtcctggtgatcgtgatt
caactccaccttaagaaaaagtgcctgagttctctgtgggtcagcgcggaaaaatgggtg
cggacagtggtagcatgggccaagcttccacgtgcagtgttcatggctggcattgagaga
agggcggccaggagctgcttaataagcacagctacatcaccatctctggaaacagagtct
gtgcagtctttctgcatgaaactgattcgtaatatcctgaaggaaggcttacatgatgtg
aagactcccgtttgtaagcagttctttcttgaactcaacttgcttctccgtaaccgcatg
aacttggagctgagtcccaagcagactcaagaattgcagagtactctgaagcatatcata
aggaccatgtggatgaaatcaggaccttcttcccccatcgtggagagctttcccattggt
gtaaatgaaagacaggaagacatgcatccagtgaatatgtgtaatgagcacccacctcac
ttgtcagcagcaaggaaggatgaagtctgccaagaaggccaagtacaagagggctccatg
ttagcaaacagatacacgtatgttcaaaaaaccatgagctgtcaccagacactagggata
gacataaaggttgagaacatctggtcaggggtggagagacccagagcttccagtcctctg
atgacaaagaatgatgacagcagtgatgctttggagaaaagtgttgatcagaatgacctt
acaagccaaaggaaacctctgagacctctgatacctgacttcaaggagaggttgagacat
ctttttgataagtatagaatcagcaccatgctggagtcaaaaacaaaggaggagcagtca
gttagagaccaaaggaaaagccaggaagggccgaagagtgatattgttgcaggtagcgct
ggcaacacatcagatccattgctctgcaaatcgggggcaggctcaagcaagtcttttctt
agtctgtcagcctgtatgaaaaataagtgcaaggatacggctttgggttttgaaacaggg
cagtctggttctgaagaaggcagcagtgatgacatgaaggagacggtgccacttgacatt
gtggtgaggaatcagaggaatgaatttgaagcagctgtcgctgtcacttcaactagcaca
gcaacagatccccaaattaacatagtcttcaataaaggcaccttcactagtttccccatt
gactctaggcaggaaagcagcaagaaaggtatgggctctgttcaatctcagtcttccagt
gaagactgcccttctaaggcagcaaagggaccaagctatacaattattatttctgattct
tcagaagaggatgaaaaccaagggaacactagtagagagagcagaaacgatacaacatgt
gtgtgccatgagaagcaatccagtgcacaggggcaagagccaatgaattcctcaccaaca
aatgcggaacatgaatcacagttgtttgagttcgaatcagaagctgaaatttactcagag
tggcaggacagccaaactaatgaggaaccgacagaggaggagaaccttttagtggagaca
gacaatggccacagagccactgacttggaaataaattactggggttatgagtcgaaccct
cattggtttaatgccactgaagaagcaaaagaggaccatgtgcaaaacagtgaaactaaa
acaaagccacatacaccggctcagaaggtcaacattagcagcagaaatgcaatgtgttgc
tcgacttccacagggatggatgcagggtgttccagacacatagatccatcagcacctact
gctccttcagagacagcatctgctgtcaaagaatctactattcagccaaagaaggcacca
ccacaggcagaaccagcaagatctactcctgctgtggtgccacctgccaaagtccaccat
tttccacccccaacctcactgacagagaatcttggcctgtcaaagaaagtccgtagagca
gctgaactatctcagcgcacacaggacagtcttgctgagttgcgtcgtcatggggaaatt
gctggcagggtagatgttgcacagaaaagaacatcacaactaataaatgcttcacacctg
actactaaaaatagaaaaatgctttcttgccaagaacttcagttctataggcaggcaagg
cctaaagagagagagaagggtcagcacactcaaagaggaaacccaagttcctcaatcctt
gaagctacagctagtaaaaccaatcccttgacttctaccgattcctcctctagctcttgt
gatgaggatgtggctttgaaagagggagagccacaattgaatgagaacattgaagatgac
aacttgtttcttacacagtctgatccagtggacatggagctgtgttcacaaatagaaagt
ggcagtaaccccacacacatggaagtcagtgtatctgcaagcccactacaggatgctaat
gagatatgcaaggaagcaggttctaaaagagcagctgaagcagaggctcacggcgcaagc
tgttctgctggtggcccacaagacaatgcgtctgccaagacttttgcaccccctaggctc
tccacgatgaaaatcttcagcgtttcttcccggaacacaaacctcaccaaggagctcgag
agcatcccaaagcccccagcagttccaaagagcaaatcatattccttcatgccccccacc
tcaaaggggaatggattgcagtcccaaatccccatgccaaacagcattctccaaccacag
aattcgaacaacgtccctcagttgctaaatgtgcaaaataactccaatgtgtatactggt
ggggtgctgcctgcctgcagacctgtttcctggcatgaaatgaatccacgcttcacacaa
gcaaacagcgtgaatgctcagcagagaagtcctgccatatttagcagagaaatcctgaag
tggaactatgacatgtttgcacagttcagtcagtttgggccaccagcttacctcctccag
tctgttatgacttctgttccagccacttttaacaattacaatgactacttcaatactttc
ttccccttaatgatgctaaatacctttgaaacagtggcacaagattggatagagaaccag
aaatggaaagacaaaaggaatttccatttaactttgctgaacttcagtctggacacaaat
gaagcagattttacagctaacctctcggagagcaatttggggagacagtacccaaagcaa
gatgactttgtggtcttaacagtgtatgaaaagcaagcctttcatagcaatcctggcaag
gcagaaagccacccagtgtgccacgttggttacgtcactcggttttattttaaatacaaa
gagcaggatgtcgttaatctgtctgtcaagacacaagggaatttgtcccgtatcgagaag
aaagtaatgtgcctcaccatttgttcattggccaccatgcagcgaatgtttaaggccctt
cttctgcttaaccgaagccctctagccaaagccataatcaacacagaatatactgacttc
tctctcatgggctcaaatgtggactctgagaattcttcttcgtacatgagagaatttaat
gaagatcaaaggacagctattgaaacagcttatgccctcgtgacacagtccccttcactg
cccaaaatttgcttgatccatgggccacctgggtctgggaaatctaagactatccttgga
ctcctttactgcattttcattgagagaccaggaaaagaaaattctgcgcaaagcaaaatc
aagaaccgtgtgctgctgtgcgccccatccaacgctgctgtcgacgacctgatgaaaaaa
ataattcttatgttcaagggaaaatgccaggacagtagcagtcctttgggaaactgtggt
gacatcaacttggtgagactgggacaagaaaactccatcagcagggacgtctggaagttt
agtctagatgcccaggtcgaccatgaaataagcaaagcagcccttggcagacatcaagat
atctgcagacgaaaagaagacctggatcgacagctggacattatttgtcgccagcgtgct
atagcaaaaacccaaagcgctgaccagctgcaattattagacaacgagatttgcagactt
ggagaggaaagaaagaggctcactgttcaactgaagaaggattgtggacgatcgcaaggt
gatttgaaagcgaacatcatcctgaagtctcacatcatctgctgcacactgagcaccagt
gggaatagcatgctggcatcagcattccggcggcagggctgtgaccctctgagctgtgtc
attgtggatgaggctgcacagtcttgtgagatggaaactctcatcccgctcactcatggc
tgcaaaaaactggtcctggttggagacccaaagcagcttcctcccacagttagatctatg
agagctgaggaatacggctacgggcagtctctgatggagcggctgtgcagacagctggat
gcgcagctccagaataaagtcattgacaggcttccagtcctgcgcttgaccactcagtac
aggatgcaccctgagatctgcctcttcccttctaactacgtctacaactgtgccttgaaa
actgacatgaggacagaagagaaccgattctctaaggattggcccttcctaccgtacctc
ctctttgatgttttggatgcccatgagatacgggagaccgattccttcgtcaatctccag
gaagtgaaactggtcgtagaattaattacgttaattacaaaaacgaagaaaagcatcagc
tatcgtaacattgggatcatcaccccatacagtgctcagaaaagaaggatcctgctcgag
ttggagaaagaatttggaagagaagaaaagggcgttgcagaagtcgacactgtggatggg
ttccagggccgtgagaaggactgcatcattgtcagctgtgtcagagcgcaaagcacgcaa
gggtcaatagggttcctgaagagtctgcagcgtctgaatgtcaccctcacccgagccaag
tacagcctcttcatcctgggacacctgaagactctcatggaaaataaagattggaacgca
ttgattcaggatgctcagaaaagaggctccatcatcaagaccacctccaaaaccatgtac
aacagtattccttgctatgcaactggtgctaagatgatcctgaagcccatgtcagtccag
cagagactggcgagagcagcaattgggcaggtgaccacggtggccacatcgggtgaagct
cctgcacaacatccccagccatcatcttctggtgctcccgctcctgctcccggtcctgct
ccagggagcaataaagaatctcctgcgcaagcccagccaagtctggtggtacccagattt
gggcaggtgaccatggcagccctgatgaatgaagtccctgtacaacatccccagccatca
tcttctgctgctcctgctccaaggaacagtggggcacctctaatgccagcatctgggcac
tccagttcctcaaacccacaggctacatctcagaataggccaagagatccacggctggcc
aagagggcagaggaaggagtcagaaggagccccactgagagccatagccccacagatccc
aagcgacagaagacaacagagtag
DBGET
integrated database retrieval system
