Podarcis muralis (common wall lizard): 114591248
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Entry
114591248 CDS
T06059
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03440
Homologous recombination
pmua03450
Non-homologous end-joining
pmua04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114591248 (RAD50)
03450 Non-homologous end-joining
114591248 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
114591248 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmua03032
]
114591248 (RAD50)
03400 DNA repair and recombination proteins [BR:
pmua03400
]
114591248 (RAD50)
DNA replication proteins [BR:
pmua03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
114591248 (RAD50)
DNA repair and recombination proteins [BR:
pmua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
114591248 (RAD50)
BRCA1-C complex
114591248 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
114591248 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
114591248
NCBI-ProteinID:
XP_028573813
LinkDB
All DBs
Position
2:complement(55256865..55292622)
Genome browser
AA seq
1335 aa
AA seq
DB search
MSHWGAVYEQYKVVFIEKEYSLKMSRIDKMSILGVRSFGVEDKDKQVITFFNPLTILVGP
NGAGKTTIIECLKYICTGDFPPGTKGNSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQ
RSMACTQKGKKTEFKTLEGVITRTKYGEKVSLSSKCAEIDREMISALGVSKSVINNVIFC
HQEESNWPLSEGRALKQKFDEIFSATRYIKALETLRQVRLKQSQRVKECQVELKYLKQNK
EKAHEIQNQLSDRETQLAASKENVKSIENQLEPLKNRLADIEQNLVKVMRLDNEVKALES
RKRQMEKDNQDLQQKMEKVFQGTDDHLRDMYQNHQKTVREKERRLTECQRELERANKEYQ
RLNREKSELLVEQGRLQLQADRHQQNIKTRDSLIQSLAAQLELEGFERPPFNERQNNSFH
RLVKERQDKDMEAANQLMREFGEKEAMKQKQIDEIRDKKTGLERTSDLKSDIQNKKQLEA
KNLKHELQQLEGSSDRLLELNQELTRAKHELYEAEKNCNVEALEVEVQGLQREKANLDSV
LRKLDKEMEQLNLNTAIITQMDMLKKDKADKEEQIRKIKSRHNEELISLLGYFPNKRQLE
DWLHSRTKEINQTRDKLAKLSKELVSAEQNKNHITAELKRKEEQLSGYEEKLFDVCGSQD
FESDLYKLQDEIEKTSKQRAMLAGATAVYSQFITQLTDEKESCCPVCQRVFETQAELQDV
LDDLQSKLRLAPDKLKATESELKRREKRRDEMMSLKPVRQMVSELQEKDLPDLRNKLQTL
NRDIQQLKGDTEEQETLLGTIMTEEESAKACLQDITLMERYQTDLKDVERKIAQQAAKLQ
GVDLGRTLLQVSQEKQEKKHQWDTVTGKIELKQTLKQDQQNQVQNLKSAVNELQTEKLEI
SSRMQRRQQLEEQLVELTTELHSLNREIKEAKEQLFPLEATLEKLQHEKEELISKKNTSY
KVTQEKINEIKEKIKNIHNYIKEIENYIQEGKEEYKQQKESELDEVKDLLAECEKKKETT
NKEIGTIRQNIDTQKIQERWLEDNLTLRKRNEDLKEVENSIKQYLKEMGEMEVPQLKRDR
QHLEEKIEELKRKESLALGRQHGFEEEILRFKRELRESQFKDAEKKYKEMMIDMRTTELA
NKDLDIYYKALDQAIMTFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSAAD
KRRSYNYRVVMIKGDTALDMRGRCSAGQKVLASLIIRLALAESFCLNCGILALDEPTTNL
DRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLSRSEYVEKFYRIKKNIDQCS
EIVKCSVTSLESYVH
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactggggggcggtttatgaacaatacaaggtagtgtttatagaaaaggaatat
tcattaaaaatgtccaggattgataaaatgagcatcctcggtgtgaggagctttggagta
gaggacaaagacaagcaagtgatcactttctttaatcctttaactatcttggtgggacca
aatggtgctggaaaaacgactatcatagaatgtctcaagtatatttgcaccggggacttt
ccacctggcaccaaaggaaactcatttgttcatgacccaaaagtcgccaatgaaacagat
gtcagagctcaaattcgacttcagtttcgtgatgttaatggagagcttgtagctgtccaa
agatccatggcatgcacacagaaaggaaagaaaacagaatttaaaactcttgaaggagtc
attactagaacaaagtatggggagaaggtcagtctaagctccaagtgtgcagaaattgac
cgagagatgattagtgccctgggcgtttctaagtctgtgattaacaatgtcattttctgc
catcaagaagaatccaactggcccctaagtgaaggaagagctctgaaacagaaatttgat
gagatcttctcagcaaccaggtacattaaggctttggaaacactccgccaggtacgactg
aaacaaagccagcgagttaaagagtgtcaagtagaactgaagtatttaaaacagaataaa
gaaaaggcacatgagattcagaatcagctttctgatagggaaactcagttggctgcatcc
aaggaaaatgtcaaatctattgagaatcaacttgaacctttgaagaatcgtttggcagac
atagagcagaatcttgtgaaagtaatgagacttgacaatgaagttaaagctctggagagt
cggaaaagacagatggaaaaggataaccaagatttgcaacaaaagatggagaaggttttt
caaggaactgatgatcatcttagagatatgtaccaaaaccaccaaaaaactgtgagagaa
aaggagaggagattaacagaatgccagagagaattggagagagcaaacaaagagtatcaa
agactcaacagagaaaaatcagaattgttggttgaacaaggtcgtcttcaattgcaagcg
gatcgtcaccaacagaatattaaaaccagggactcattaattcagtctttggcagctcag
ttggaactggaaggatttgaaagaccaccatttaatgaaaggcaaaataatagttttcac
aggcttgtgaaagagagacaggacaaagacatggaagctgctaatcagttaatgagagaa
tttggtgagaaggaagcaatgaagcagaagcaaatagatgaaataagagataaaaaaact
ggacttgaaagaaccagcgacctgaagtcagacattcaaaataagaagcagcttgaagca
aagaacctaaaacatgaattgcagcagcttgaagggtcctcagatagactcctagaactg
aatcaggaacttaccagagcaaaacatgaactgtatgaagccgagaagaattgcaatgtt
gaagccttggaagtggaagtacaagggctgcaaagagagaaagcaaatttggacagtgtt
cttcgaaaactggataaagagatggaacagctgaatttgaatactgcaataataactcaa
atggacatgctgaagaaagataaagctgataaagaggagcaaatcagaaaaataaaatcc
aggcacaacgaagagttaatttccttgcttggatatttccctaataaaaggcagcttgaa
gattggcttcactctagaactaaagaaattaatcagacaagagacaaacttgccaagctc
tccaaagaacttgtttcggcggagcaaaacaaaaaccatattactgctgaactaaaaaga
aaagaggagcagttgtctggttatgaagaaaagctttttgatgtttgtggaagccaggat
tttgaaagtgatctatacaaacttcaagatgaaatagaaaagacatctaaacaacgagcc
atgcttgctggagctacagcagtttattcgcagttcattacacaattaacggatgaaaaa
gaatcgtgttgtcctgtttgtcagagggtctttgaaacacaagcagaactgcaggatgtg
ttagatgatcttcagtccaagttgcgtcttgctccagacaaactgaaggcaacagagtct
gagcttaagagaagggagaagagacgtgatgaaatgatgtcacttaaacctgtcaggcaa
atggtatctgaactccaagaaaaagacctacccgacttaagaaacaaattacagacactc
aacagagatattcaacaacttaaaggtgatacagaagaacaggaaaccctcctaggtact
ataatgaccgaggaggaaagtgctaaagcgtgtctgcaagatattacacttatggaaaga
tatcagactgatctaaaggatgttgaacgaaaaattgctcagcaggctgctaaactacaa
ggagtggatttaggtcggaccctgctacaagtaagccaggagaagcaagagaagaagcac
cagtgggatacagttactggtaaaattgaattgaagcagactcttaaacaagaccaacaa
aatcaagtccagaatctgaagagtgcagtgaatgagctgcaaacagagaaacttgaaatt
tccagtcgtatgcaacgtcgacagcagctggaagagcagctagtggagctgaccactgag
ttacattccttgaacagagagatcaaggaagcaaaggagcagctatttccgcttgaagca
actttagaaaaactgcaacatgagaaagaagagttaataagcaaaaagaacacaagttac
aaagtgacacaggagaagataaatgagattaaagagaaaattaaaaacatccataactat
ataaaagagattgagaactatattcaagaagggaaagaagaatataaacagcaaaaggaa
tctgaacttgatgaagtcaaggatctgctagcagaatgtgagaaaaagaaagaaacgaca
aataaagaaattggaactattagacaaaatatcgatactcagaagattcaggagcggtgg
ttagaagataaccttactttaagaaaaagaaatgaagatctaaaagaagtcgaaaatagt
ataaagcaatatttgaaggagatgggggaaatggaagtcccacaactgaaaagggaccga
cagcatttagaggagaaaatagaagaattgaaaagaaaagaaagcttggcgcttggtcga
cagcatggatttgaggaagaaatccttcggtttaagagagagctgagagaatcacagttt
aaagatgctgagaaaaaatacaaagaaatgatgattgacatgagaacaacggagttggca
aacaaggatctggacatttactacaaagcactggatcaagcaataatgacatttcacagc
atgaagatggaagaaataaacaagataattcgtgacctttggcgaagcacctacaggggg
caagatattgaatatatagaaattaggtctgatgcagatgagaatgtttctgctgctgac
aagaggaggagttacaattacagagtagtaatgataaagggagacactgctctagatatg
aggggcagatgtagtgctggacaaaaggttcttgcttccctcattatccgccttgctcta
gcagaatccttttgtctcaactgtggcattcttgcactggatgagcccaccaccaatctt
gatcgggagaatattgaatctcttgcacatgccttagtggagataatcaaaagtagatcc
cagcaacgcaacttccaacttcttgttataactcacgatgaagactttgtggaactattg
agtcggtctgaatatgttgagaaattctacagaattaaaaagaacattgaccagtgttct
gagattgtaaaatgtagcgttacatctttggaatcatatgttcattag
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