Podarcis muralis (common wall lizard): 114592065
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Entry
114592065 CDS
T06059
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03013
Nucleocytoplasmic transport
pmua03015
mRNA surveillance pathway
pmua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114592065 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
114592065 (DDX39B)
03015 mRNA surveillance pathway
114592065 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmua03019
]
114592065 (DDX39B)
03041 Spliceosome [BR:
pmua03041
]
114592065 (DDX39B)
Enzymes [BR:
pmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114592065 (DDX39B)
Messenger RNA biogenesis [BR:
pmua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114592065 (DDX39B)
Spliceosome [BR:
pmua03041
]
Complex C
Other components
EJC/TREX
114592065 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114592065 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114592065
NCBI-ProteinID:
XP_028575742
LinkDB
All DBs
Position
2:complement(111959477..111970805)
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AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGDGVDVPTKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgatgttgacaatgaacttctggattacgaagatgatgaggtggaaaat
caggcagctggagatggggtggacgtcccaactaagaaagatgtcaaggggtcctatgtc
tccatccacagttctggcttccgggatttcctgttaaaaccagagctgctgcgtgccatt
gttgattgtggctttgaacacccctctgaagtgcaacacgagtgtatcccacaggccatc
ttgggcatggatgtcctgtgccaggccaaatctggcatgggcaagactgccgtcttcgtt
cttgctacactacagcagttggagccagtcactggtcaggtgtcggtgctggtgatgtgt
cacacccgtgagttggccttccagatcagcaaggagtatgagcgcttctccaagtacatg
cccagtgtcaaggtggcggtgttctttgggggcctgtccatcaagaaggacgaagaggtg
ctgaagaagaactgcccccacattgtggtggggaccccgggccgcatcctggccttggcc
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgaatgtgacaag
atgcttgagcagcttgatatgcgccgggacgtccaggagatcttccgcatgaccccacat
gaaaagcaggtcatgatgttcagtgccacactcagcaaggaaatccgccctgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggatgacgagaccaagctgacgctgcat
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctctttgac
ctgcttgatgtgctggagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgcgttggctcagctgctagtggagcagaacttcccggccatcgccatccacaggggt
atgccccaggaagagaggttgtctcggtaccagcaattcaaagatttccagcgccgtatc
ttggtggccaccaatctctttggtcgtggcatggacattgagcgggtcaacattgctttc
aattatgatatgccagaggattcggacacctatctgcaccgggtggctcgtgctgggcgc
tttggcacgaagggtctggcgataactttcgtgtcggatgagaatgatgcgaagatcctg
aatgaagtgcaggaccgcttcgaggtgaacatcagcgagctccctgatgagattgacatc
tcttcctacattgaacagacccgataa
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