Podarcis muralis (common wall lizard): 114595588
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Entry
114595588 CDS
T06059
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114595588 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmua03021
]
114595588 (PCF11)
03019 Messenger RNA biogenesis [BR:
pmua03019
]
114595588 (PCF11)
Transcription machinery [BR:
pmua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114595588 (PCF11)
Messenger RNA biogenesis [BR:
pmua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114595588 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
114595588
NCBI-ProteinID:
XP_028581797
LinkDB
All DBs
Position
4:12917315..12939088
Genome browser
AA seq
1744 aa
AA seq
DB search
MSGGGGSSSSSSSSSSSAASEGPVGGGGGSSGEDACRDYQSSLEDLTFNSKPHINMLTIL
AEENVQHAKDIVSLIEAQVAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVATFVNV
FEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPNVNTSSIHVNP
KFLNKSPEEPPAPSPAVCPPPVSCSAVSSTPVVPEIQKNLTQEQLIRQQLLAKQKQLLEL
QQKKLELELEQTKAQLAVSLSGQQSGSSLSQASVKPHVPQPSHMPVKAPHQVCLPPEKSR
LSPLHDVKTANRDPRLNRTSQHSSHSKDQSHRKDFTVSPVNQADPKVSKTLQAEKQSTSK
QERQKQNEKSQKKEFDQFDSKLKSPSPLQNKLLHAKDTRNQESENTRVSEISKRDPRLKK
HLLEKPDGKDDDLKEKRRCMERKDKEEHRPVSGRTKIINGIVQKQDPNTEESEKQVGKLG
RSGTRKRSRSPRSRSPSSHSPKRRDRRSPKRRLRSLSPGPKTAKSRVSGPKQSHAEDFGQ
GIREERSSNKRKQEVRDSRRPKKTHEDRPQEGMNLHSSKANSEPKENVENWSSSKSNKRW
KSGWQENKNPQPTEEHQGLSKSPHQRHRDTWATSSKGVTSPRTPKQQHRLSVDANLQIPK
ELDLANKRELLKKANEQLSSGEITQDEFLVLCHQIRQIIQYQEGKHRCNVWDSPTGEKGI
SKKKPLLSDADLIYHEHKAKLKRTQVQHSFQRLNMMDPEDILLERHLNETFLSGMDCEQT
KSKSGSQFSERSRRHSPVGSNRPYSENSPHDSRRRHDESNSSKGIRDERRSPFNEHYKRA
RYEEPEKQFTENTGSRFGVSDGKQRFSSLMEERSHFEGSPRHPGTRAGGDGQGSHFEGLA
NASSRIEGPQPQTNLRFEGSLGQPASQFDGPPGQSGGKSSLFDGPAQMGGGPLRFEGPSG
QVGAGTAIRFENPMGQPGGALRFEGPAGQSMSGIRFEGNHGQPSGGIRFEGPHGQPSAGI
RFEGPHGQSSGIRFEGPHDQPSGTMRFDGQPSGGMRFEGPHGQPSSGIRFEGPHDRPVGP
HGPPGGGMRFEGPHGQPMGPHGQPAAGMRFEGPHMQPMGPLGQPGGNLRFEGPHGQPMGP
HGQPARFEGPHGQPMGPHGQPLGPHGQPGVGPRFEGPHGQSGIGPRFEGPSGQAGGGLRF
EGPINQTGPRFDGCHSRFDGQPGQPSLMQRLDGLHVQPGPRFEMGPAQQTQPRFDGPPGQ
QIPPRFDAPIPQRFEDPKHQQATRFDIPLGHQGQRMENVANHPASRLETPPYGQTGPYNE
PPNQPPYNAPSQGMQFQRTEQIFDNPQGPNFNGPPGSGAQNFPNTINRAPGPYYDDKNLQ
YGNFSGMTGNVQQPQQVPVMSVASTQPVPYNPGQPLLAAHAQNPGSFVQNQPGQYLKGNA
PLSYPDNHLGQLDVNELFSKLLSTGILKVLQTDSTSAQVSEVSAQPAPEEEEEDQDQTED
QDVPDLTNFVIEELKQRYDSIINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDSTP
SPSKTPVENPLNIMLNIVKQEVQDSCNSPKVKEEPEDTPADDCMEGSSPTLAEIKTEPEK
VESV
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggctccagtagcagcagctccagcagcagctccagcgcggcctcg
gaggggcccgtgggcggcggcggcggcagcagcggggaagacgcctgccgcgactaccag
tcttcgctcgaggacctgaccttcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggagaacgtgcaacacgccaaggacatcgtctcgctgatcgaggcgcaagtcgcc
aaggctccttctaatgagaaacttcctgttatgtaccttatggactccattgtcaagaat
gttgggagagaatatcttgctgcgtttactaaaaacctagttgcaacatttgttaatgtg
tttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgttccacgtgggat
gaaattttccctttgaagaaactctatgcccttgatgtccgggtgaattcagtagaccct
gcttggccaattaaaccgctaccccctaatgtgaatacttctagcatccatgtgaatcct
aagtttttaaataaatcgcctgaggaaccacctgcacctagccctgcagtctgtcctcct
cctgtgtcctgttctgctgtgtcctctactccagttgttcctgaaatacaaaagaatttg
actcaagagcagctaataagacaacagctactagcaaaacaaaaacagttgttagaactt
caacagaaaaaattagaactggaactagagcagactaaagcacagctggcggtttctctt
agtggtcagcaaagtggatccagcttgagtcaagcatctgtgaagccacatgttccacaa
ccatctcacatgccagttaaagctcctcatcaagtttgtctgccacctgaaaaaagccgt
ctctctccactccatgatgtcaaaacggccaacagagatcctcgtcttaatagaacaagt
caacattcttcccattctaaagatcaaagtcataggaaagattttacagttagtccagtc
aatcaggctgatccaaaggtcagcaaaacactgcaggctgaaaaacaaagtacatcaaag
caagaaagacaaaaacagaatgagaaatctcaaaagaaagagtttgatcaatttgattca
aaattgaagtctccatctcccttgcagaacaagctgcttcatgctaaagatactagaaac
caagaaagtgagaacaccagggtatctgaaataagcaagagagatccaagattgaaaaaa
catcttctagagaagccagatggtaaagatgatgatctgaaagaaaagaggagatgcatg
gagagaaaagacaaagaagagcatagaccagtcagtggtagaaccaaaataattaatggc
attgtccaaaagcaagatcccaatactgaagagtcagagaaacaggttggaaagctagga
aggtcgggtaccaggaaaaggtcacgttcccctagatctcggtcaccatcttcccattct
ccaaaacgaagagaccggaggtcacccaaaagacggctcagaagtctctctcctggacct
aaaactgcaaagtctcgtgtgtcgggaccaaagcaatcccacgcagaggactttgggcag
ggaatacgggaagaaaggagctctaacaaaaggaagcaggaagtgagagattcaaggagg
ccgaagaaaactcatgaagaccgaccgcaggaaggaatgaacttgcattcttcaaaagca
aactcggaacctaaggagaacgtggagaactggtcaagttccaagtcaaacaaaaggtgg
aaatctggttggcaagaaaataaaaacccccagccaactgaagaacaccaaggactttct
aaatcacctcatcagaggcacagggacacctgggcaaccagtagtaaaggagttacatca
cctcgcacaccaaagcagcaacatagattaagtgtggatgcgaatttgcagattccgaaa
gaactggacttggcgaacaagagagagttacttaagaaggctaatgaacaactgtcatct
ggagaaataacgcaagatgagtttcttgttctgtgccatcagattcgccaaattatccag
tatcaggaaggaaaacacaggtgcaatgtgtgggatagtcccacaggtgaaaagggaatt
tcgaaaaagaagcccctgttgtctgatgcggatttaatatatcatgagcataaagctaag
ctaaaaagaacgcaagttcagcattcctttcagagactcaacatgatggatcctgaagat
attttactcgagagacacttgaatgagacatttctttctggaatggattgtgaacaaaca
aaaagcaaatcggggagtcaattcagtgaaagatcaaggcggcattcccctgttggtagt
aacagaccatattctgaaaattcacctcatgacagccggagaagacacgatgagtccaac
tcctccaaaggtattcgagatgagcggaggtctccattcaatgaacattataagagagca
agatacgaagaaccagagaaacaatttactgagaatacaggatcacgatttggggtttcg
gatggaaagcaaagatttagttcactgatggaggaaagatctcattttgagggctcccct
agacatcctggaacaagggcaggtggagatgggcaagggagtcactttgaagggctggct
aatgcaagttctagaattgaaggaccacaaccacagactaatttaaggtttgaggggtcc
ctaggccagccagcatctcagtttgacgggcccccaggacaatctggaggaaaaagttct
ctgtttgatggaccggcacagatgggtggtggtcccttgaggtttgaagggccctcaggg
caagttggtgcagggactgctatacggtttgagaatcctatgggacagccagggggagca
ttgagatttgaggggcccgcaggccagtcgatgagtggtataagatttgaagggaaccat
ggtcagccctcaggtgggataaggtttgaaggacctcatggtcagccatctgctgggatt
aggtttgagggaccacatggtcagtcatctgggatcaggttcgagggaccacacgatcag
ccttcaggtactatgaggtttgatggccagccttctggtggaatgaggtttgaaggtcca
catggccaaccttcaagtgggataaggtttgaagggcctcatgaccgtcctgtggggcct
catggtcccccaggaggtggaatgaggtttgaaggcccccatggccaacctatggggcct
catggtcagccagcggctggcatgcgatttgaaggacctcatatgcagccaatgggacct
cttggccagccaggaggcaatttgcgctttgaaggtccacatggacagcctatgggtccg
catgggcagccagcaagatttgaaggtcctcatggacagcctatggggccacatgggcag
cctttagggccacatggtcaaccaggtgttggtcccagatttgaggggcctcatggtcag
tctgggattggtcccaggtttgaggggccttcaggccaggctggaggtggacttaggttt
gaaggacctattaaccaaacagggccaaggtttgatggctgtcattcaagatttgatggt
caacctggtcagccatcacttatgcaaagactggatggattacatgtgcaacctggtcca
aggtttgaaatgggccctgctcagcagacacaacctcggtttgatggtcctccgggtcag
cagatacccccaagatttgatgcaccaatacctcaacggtttgaagatcctaaacaccag
caggcaacgcgatttgatattcctcttggtcatcaaggtcaaagaatggaaaatgtagct
aatcatcctgcctcaagactcgaaacaccaccttatggacaaactggcccttacaatgaa
cctcccaatcagccaccctataatgcgccatcacaaggaatgcaattccagagaactgag
caaatatttgataacccgcaaggaccaaacttcaatgggccacctggttctggagcacag
aactttcctaacactattaacagggcaccgggaccttactatgatgacaagaatcttcag
tatggaaatttcagtggtatgacgggaaatgttcagcagcctcagcaggttcctgttatg
tcggtagcatctactcaacctgtaccttacaatccagggcagcctctcttagcagctcat
gcacaaaatcctggaagctttgtccaaaatcaaccaggtcagtatttaaaggggaacgct
ccactttcctatcctgataatcatcttggacaacttgatgtaaatgaattattctcaaaa
ctactttctacagggattctcaaagttttacagactgattcaacttcagctcaagtcagt
gaagtttctgcccagccagctccagaggaggaagaggaggatcaagaccagactgaggat
caagatgtcccagacctaactaacttcgttatagaagaactaaagcagcgatacgatagc
attataaaccggctctatactggcattcagtgttactcttgtggaatgaggttcacaact
tcgcagacagatgtatatgcagaccatttggactggcactatcgtcagaaccgcacggaa
aaggacgtcagtcggaaagtcactcacagaagatggtactacagcttaacggactggata
gagttcgaagaaatagctgatttagaggaacgtgcaaagagccaattctttgagaaggtg
catgaagaagttgtgttgaaaacacaagaagctgctaaggagaaggagtttcaaagtgtc
cctgctggcccagctggagcagatgagagctgtgaaatctgccaggagcaatttgagcaa
tactgggatgaggaagaggaggagtggcacctaaaaaatgccattcgagtagacgagaag
atataccatccgtcatgctacgaagattatcaaaatacctcgtcatttgattcaacgcca
tctcctagcaagacacctgtagagaacccgctaaatattatgttgaatattgttaagcaa
gaagtacaggactcctgtaacagtcccaaggtaaaagaagagcctgaggatacgcctgct
gatgattgtatggaggggagctcacccacattggccgaaattaaaacagagcctgaaaag
gttgagtcagtttaa
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integrated database retrieval system
