Podarcis muralis (common wall lizard): 114605101
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Entry
114605101 CDS
T06059
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmua
Podarcis muralis (common wall lizard)
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmua03016
]
114605101 (RTCB)
Enzymes [BR:
pmua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114605101 (RTCB)
Transfer RNA biogenesis [BR:
pmua03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114605101 (RTCB)
Prokaryotic type
tRNA splicing ligases
114605101 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
114605101
NCBI-ProteinID:
XP_028601754
UniProt:
A0A670IUJ2
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All DBs
Position
10:49427399..49446577
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKHCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNSCRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGTTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagtacctggacaagctggacaagcactgctgg
cgtatcaagaagggcttcgtgcccaacatgaacgtggaaggtgtcttctacgtgaacgat
cctttagagaagttaatgtttgaagagttaagaaattcatgcagaggtggaggagctggt
ggcttcctcccagccatgaaacaaatcggaaatgtagctgcactgcctggcattgttcat
agatctataggacttccagatgtccactcaggctatgggtttgctattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggtggtgtcggattcgacatt
aactgtggtgtacggctcttgcgcaccaatcttgatgagagtgatgtccaacctgtgaag
gagcagcttgctcaggccatgtttgaccacattcctgttggtgtggggtcaaagggtgtc
attcctatgaacgccaaggatttagaggaggctctggagatgggggtagattggtccctc
cgagaaggctatgcctgggctgaggataaagagcactgtgaagaatatgggaggatgctg
caagctgatccaaataaagtctctgcgagggctaagaaaaggggtttgccccagctgggg
actttgggagcaggaaaccattatgctgagatccaggttgtagatgaaatttttaacgaa
tatgctgccaagaagatgggcatagaccacaagggccaagtttgtgtgatgatccacagt
ggcagcagaggccttggccaccaagtagctacagatgccctagtggctatggaaaaagct
atgaagcgagacaagatcatagtgaacgaccgccagctggcatgtgccaggattgcttcc
caggagggacaggactacttgaagggaatggcagcagctggaaactatgcatgggtcaat
cgttcttccatgactttcctcaccagacaggcttttgctaaagtcttcaataccactcct
gatgatctggatctgcatgtgatctatgatgtatctcacaacattgccaaagtagagcag
catgtggtagatggaaaagaacggaccctgctggtgcaccggaaaggaacaaccagagct
ttccctcctcaccaccccctcattgcggttgattaccagctgactggccagcctgtcctg
attggtggaacaatgggaacttgtagctatgtccttactggtaccgaacaaggcatgact
gaaacctttggtaccacctgccatggagcgggccgtgcattgtcacgtgcaaaatctcgg
cgcaacttggatttccaggacgtattggacaagctggcggacatggggattgcaatccgg
gttgcatcccccaaactggttatggaagaagcccctgaatcttacaagaatgtgacggat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacccata
gcagtgatcaaaggctaa
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