Pseudomonas mucidolens: NCTC8068_00271
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Entry
NCTC8068_00271 CDS
T08935
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC8068_00271 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmud03019
]
NCTC8068_00271 (recQ1)
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_00271 (recQ1)
Enzymes [BR:
pmud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC8068_00271 (recQ1)
Messenger RNA biogenesis [BR:
pmud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC8068_00271 (recQ1)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC8068_00271 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
SQH31352
LinkDB
All DBs
Position
1:312737..314674
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AA seq
645 aa
AA seq
DB search
MHNTLQQVFGYPQFRPGQEAAVSAVLAARSAAAIFPTGSGKSLCYQLPAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSREDANDVMARARSGELKILMISVERLKNERFR
HFLQSVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFRIPQALLLTATATPKVIADM
QAKFSIAAEDVVTTGFYRPNLNLLVEPVSGIDKRRRLVEWMRERAGQPSIVYVTLQKTAE
HIAEHLNRAGIQAEAYHAGLPHEKREGIQQRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQDADCLVLANRDSLNVLENFVYGDTPEQQGIRCVLEELL
AARGEAQWEFLLRPLAELSNIRELPLKTLLVQLELKGVIAPRYAYYAEYRFKYRVEPEAL
LARFSGERQQFVSAIIQAGKRARTWVTVDFDTLYQQHQAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTGFDLQALSVELYAGFKQHETKEVARIHAMLDLFATERCLGYRLAEYF
GDESAPMQCGHCSVCHGQVAHLPSPPDLPALVDKDFEGLCGDFTHRHHQHTGNLPSAERM
TRFLCGISVPLFTRLKARSIPAFAALEAYPYAEVREWVEAHMSRL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctccagcaggtctttggttatccacagtttcgtccgggccaggaagcg
gctgtcagcgccgtgctggccgctcgctcggcggcggcgatttttcccaccggttcgggc
aagtccttgtgttaccaattgcctgcggtgttgctgccacacctgacgttggtggtgtcg
ccgttgttggcgctgatgcaggaccaattgggttttttacagcgccacggtatttcggcc
ggcagtatcgattcggcccagagccgcgaggacgccaatgacgtgatggcccgggcacgt
tccggcgagttgaaaatcctgatgatttccgtggagcgcctgaaaaacgagcgttttcga
catttcctgcaaagcgtgccgatctcgctgctggtggtggacgaggcgcactgcatctct
gaatgggggcacaactttcgcccggactacctgaagttacctgattaccagcgccagttc
cgcatcccccaggcgttgctgctgaccgccaccgccacgcccaaggtgatcgcagacatg
caggcgaagttctcgatcgctgctgaggatgtggtcaccaccggtttttatcgacccaat
ctgaacctgctggtggagccggtcagtggtatcgacaagcgccgcagactggtggagtgg
atgcgcgagcgagcaggccagccaagcatcgtctacgtcaccctgcagaaaaccgccgag
catattgccgaacatttgaaccgcgctggaatccaggctgaggcttaccacgccggtctg
ccccacgaaaagcgtgagggcatccagcaacgattcatgggcgggcagtccaattgcatt
gtcgccaccattgcgtttggcatgggcatcgacaagagcgatatccgcaatgtcgtgcac
ttcgatttaccgaagtccatcgagaattacagccaggaaattggccgcgccggtcgggac
ggccaagacgccgactgcctggtgctggcaaatcgcgacagcctcaatgtgctggaaaac
tttgtctatggtgatacgccggagcagcaaggcattcggtgtgtgctggaggagttgctg
gcggcccgtggagaggcgcagtgggagttcctgttgagaccgttggcggaactcagcaat
atccgcgagctgccgctcaagaccttgttggtgcagctggaactcaagggcgtgattgct
ccgcgctacgcctattatgccgaataccgtttcaaataccgtgtggagcccgaggcgctg
ctggcacgcttttccggtgagcgccagcagtttgtctcagccatcatccaggctggcaag
cgtgcgaggacctgggtcacggtggatttcgatacgctttatcaacaacatcaggccgag
cgcagccgtgtggtgaaggccctggattacttccaggaacaaggcttgatcgagctggaa
agcaagcagatgaccgaggtgtacagcctgttggacaccggctttgatcttcaggccttg
agcgtcgagttatacgcaggcttcaagcagcacgaaacgaaggaggtggcacgaattcac
gcgatgctggatctgtttgccaccgagcgttgcctgggctaccgcctggctgaatatttc
ggtgacgaaagcgcgcccatgcaatgcgggcattgttcggtctgccatggccaagtcgcg
cacttgccctctccgccagacttgccggcgcttgtggataaagactttgagggattgtgc
ggggattttacccacaggcatcatcagcacactggcaacctgcccagcgctgagcgtatg
acgcggtttctatgcggcatcagcgtgccgttgttcacccggctcaaggccagatccatc
cccgcatttgctgcgctggaggcgtatccctacgctgaagtgcgggaatgggtcgaggct
catatgagccggctgtaa
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integrated database retrieval system
