Pseudomonas mucidolens: NCTC8068_00670
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Entry
NCTC8068_00670 CDS
T08935
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC8068_00670 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_00670 (recD)
Enzymes [BR:
pmud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC8068_00670 (recD)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC8068_00670 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_17
DEAD
AAA_16
AAA_28
T2SSE
PhoH
TraI_hel_assoc_N
AAA_25
AAA_5
NTPase_1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
SQH31737
LinkDB
All DBs
Position
1:765181..767235
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AA seq
684 aa
AA seq
DB search
MSLETPLAPLNHAADLLELLERWVDRGWLRALDKAFVGFLHELDLQADPLVLLAAALTSH
QLGHGHVCLDLFETLKAPDFALSLPPEGDMQTVAMLLPSQLLSGLDGAHWCHALAASPLV
ALAVDGSAQAQSRPLVLSGKRLYLRRYWTYERRIDNALRQRLATQEAVAADLPQRLNGLF
DQAPPEGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEKGTTLRIR
LAAPTGKAAARLTESISQQVRSLKVSDVVRGKIPTEVTTVHRLLGSRPGTRHFRHHAGNL
LPLDVLVVDEASMIDLEMMANLLDALPSHARLVLLGDKDQLASVEAGAVLGDLCRDAEAG
WYSPHTREWLESVSGESLAASGLQEDLDASHPLAQQVVMLRYSRRFGEGSGIGQLARWVN
QQDPEHARQLLAARTHDDLFCLRLKGEHDRALERLVLEGQGEGAHGYRYYLNLLRASRPP
VDTPREDPRWTGWARQLLQAFDAFQLLCAVRKGPWGVEGLNQRITAALLKARLIDSDQQW
YEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLPSRLN
DVETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRARERFSLIESRSGVFE
EAVRRKVKRLSGLMLELGTPDLNT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgaaaccccgttggcgcccctcaaccatgccgctgatctgcttgaactgctt
gagcgctgggtagaccgcggctggctgcgcgcgctggacaaggcctttgtcgggtttctg
catgagctggacttgcaggccgaccccttggtgttgctggcggcggcccttaccagccac
cagctgggccacggccatgtttgtctcgacctgttcgaaaccctgaaagccccggatttc
gccttgtccttgccgcccgagggggatatgcagaccgtcgccatgttgctgccctcgcaa
ttgctcagtggtctggacggcgcccattggtgtcacgccctggccgccagtcctctggtc
gcgctggctgtcgacggcagcgcgcaggcgcaaagtcggcccttggtcttgtcgggcaag
cgcttgtatctgcgccgttactggacgtatgagcgacggatcgacaatgccctgcgtcag
cggcttgccacccaggaagcggtcgcggcggatctgccccagcgcctgaatggcctgttc
gaccaggccccgccggagggcgtgatcgactggcaaaaacttgcgtgtgccttggcgact
cgcggagccttcagcatcgtcacgggcggtcctggcaccggcaagaccacgaccgtggtg
cgactgctggctttgttgcaggcgcctgccgtggaaaagggtacgaccttgcgcattcgt
ctggcagcgcccaccggcaaagccgcggcacgcttgaccgaatccatcagccagcaagtg
cgatcgctgaaggtgtctgatgtggtgagaggaaaaatccccactgaagtcaccaccgtc
caccgtctgctgggcagccgccccggcacccgacattttcgtcatcatgctggcaaccta
ttgccgctggatgtgttggtggtcgacgaagcgtcgatgatcgacctggaaatgatggcc
aacctgttggacgccttgccctcgcatgcgcgcttggttctgctgggcgacaaggatcaa
ttggcttccgtggaagccggtgcggtgctcggcgatctgtgtcgcgatgccgaggccggt
tggtacagcccgcacacccgtgaatggctggaaagtgtcagcggtgagtcgttggccgcc
agtggtttgcaggaagacctcgacgccagccacccgctggcacagcaggtggtgatgctg
cggtattcgcgccgttttggcgaaggcagtggcatcggccaactggcgcgctgggtcaac
cagcaggaccctgaacacgcccgccagttactggccgctcgcacacatgacgacctgttc
tgcctccgcctcaagggcgagcacgatcgggcgctggagcgcctggtgctggagggacag
ggcgagggtgcccatggctatcgctactacctgaatctgctgcgtgcttcgcgtccgcct
gtcgatacgccacgagaggatccgcgctggaccggctgggcccgtcaactcttgcaggcg
ttcgatgcctttcagttgctgtgtgctgtacgcaaggggccttggggtgtcgaaggcctg
aatcagcggatcaccgccgcgctgctgaaggcccggctgattgacagcgatcagcaatgg
tacgaggggcggccggtgttgatgacccgcaatgactacggtctgggactgatgaatggt
gatatcggcatcgccttgaagctcccggaaagcgatggcgggccgcaggtattgcgcgtg
gctttcccgcgcaatgatggccagggcggcgtacggttcgtcctgcccagccgactcaat
gatgtggaaacggtctacgccatgaccgtgcataaatcccagggttctgaattcacccac
actgcgctgatcctgccggacgccttgaacccggtgctgaccaaggagctgatctacacc
ggcatcacacgcgccagggagcggttcagcctgatcgaatcgcgtagcggggtgttcgag
gaggccgtgcgacgcaaagtgaagcgcttgagcggattgatgctggaattgggtactcct
gacttaaatacctga
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