Pseudomonas mucidolens: NCTC8068_00777
Help
Entry
NCTC8068_00777 CDS
T08935
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC8068_00777 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmud03019
]
NCTC8068_00777 (pnp)
03016 Transfer RNA biogenesis [BR:
pmud03016
]
NCTC8068_00777 (pnp)
Enzymes [BR:
pmud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NCTC8068_00777 (pnp)
Messenger RNA biogenesis [BR:
pmud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC8068_00777 (pnp)
Transfer RNA biogenesis [BR:
pmud03016
]
Prokaryotic type
tRNA degradation factors
NCTC8068_00777 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
SQH31837
LinkDB
All DBs
Position
1:889655..891760
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRAEFGDAISQAYAITVKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVEAAKASGA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcctccggcgcagtgctggttaccgttgacgacgacgttaccgtt
ctggtgaccgttgttggcgccaagaccgctgacccgagcaaaggctttttccctctttcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaaaaagaccgatccggacatcgcagcgatgatcggtacctcggctgccctggctatt
tccggtattcctttcgatggtccgatcggcgctgcccgcgttgccttccacgaaagcact
ggttacctgctgaacccgacttacgagcaacagaaagcttcgagcctggacatggtcgta
gccggtacctcggaagccgtattgatggttgaatccgaagccaaagagctgaccgaagac
cagatgctgggcgctgtactgtttgctcacgacgagttccaggttgtgatcaacgctgtt
aaagaattggctgccgaagctgccaagccaacttggacttgggctccacagcctgaagcc
accgctctgctgggcgctatccgtgccgaattcggcgacgcgatctcccaggcctacgcc
attaccgtcaaggccgaccgttacgctcgcctgggcgagttgaaggatcaggttgttgcc
aagctgtccggtgaagaaggccagccttcttccagcgaagtcaaagctgcattcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacacccgcactgtacgtccgctgaacatcgaagtcggcgttctgccgaagactcacggt
tcggccctgttcacccgtggtgaaactcaggctctggtagttgcgaccctgggtactgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgctggtcgtcgc
gaaatcggtcacggtcgtctggcgcgtcgttcgatcgccgccatgctgccagctgctgac
gtgttcccgtacaccatccgtgttgtgtcggaaatcactgagtccaacggttccagctcc
atggcttcggtctgcggtgcttccctggcgctgatggacgctggtgtgccgatgaaggca
ccggttgccggtatcgcgatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacattctgggcgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gaaatcgctctgggccaagccctggaagcgcgcctgaacattctcggtcagatgaaccag
atcatcggtcagtcccgtaccgaactgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggtggcgcgaccattcgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagctgcagaagcggcgcgtcagcgcgttctgggcatcactgcggaagcc
gagatcggcaagatctacgtcggtaaggttgagcgcatcgtcgatttcggcgcattcgtc
aacatcctgccgggcaaagacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacattctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggtcgtatcaagctgtccatcaaggacgtagaagcagcgaaggcctcgggc
gcttaa
DBGET
integrated database retrieval system
