Pseudomonas mucidolens: NCTC8068_01198
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Entry
NCTC8068_01198 CDS
T08935
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03030
DNA replication
pmud03430
Mismatch repair
pmud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC8068_01198 (dnaE)
03430 Mismatch repair
NCTC8068_01198 (dnaE)
03440 Homologous recombination
NCTC8068_01198 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmud03032
]
NCTC8068_01198 (dnaE)
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_01198 (dnaE)
Enzymes [BR:
pmud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC8068_01198 (dnaE)
DNA replication proteins [BR:
pmud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC8068_01198 (dnaE)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC8068_01198 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
SQH32242
LinkDB
All DBs
Position
1:1332111..1335632
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNALSRISLLAMSGVGYRNLTELISRGFIEGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLSGNPQEAEVLAREWMDVFPDRFYLEVQRTNRPNDEEH
LHAAVALAQKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPQDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEADADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKLRSEALKGDQLRWLGDLLKRHRGACPVTMEYTGADAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggcgggcatgaacatgcccgccgtggcggtg
actgatcagaacaacatgtgttcgctggtcaagttctacaaaaacgcgatgggcgccggg
atcaagccgatctgcggcgccgatctgtggctgtccaacaaagacccggataacgctctg
agccgcatcagcctgttggcgatgagtggcgtcggttatcgcaacctgactgaactgatt
tcccgtggctttatcgagggccagcgcaacggctcgatcattatcgagcgtgagtgggtg
gccgaagccagcgaagggctgatcatgctgtcggcggcgaaagagggcgagatcggcatc
gcactgctgagtggcaatccgcaggaggccgaagtactggcccgtgagtggatggacgtt
ttccccgaccgcttctatctggaagtccagcgcaccaatcgccccaacgatgaagagcat
ctgcacgcggcggtggccctggcgcaaaagctcggtgcgccgctggtagcgaccaacgac
gtgcgtttcatcaagaaggaagacttcgaagcccacgaaacccgcgtgtgcatcggcgaa
ggacgcgcgctggacgatccgcgccgctcgaaaaactacagcgaagagcagtacctgaaa
agcgccgaggaaatggccgagctgttcagcgacctgcccgaggcgctggaaaactccgtc
gaaatcgccaagcgctgcaatattgaagtgaagctgggcaaacactttttgcccaacttc
ccgattcccgatggcatgaccatcgatgaatatttccgcaaggtgtcctttgatggcctg
gaagagcgcctggcggttcttttgccccaagacaccaccgaagactatgaggctaagcgc
caggtgtatgtcgatcggttgaatttcgagctggatatcatcatccagatggggttcccc
ggctacttcctgatcgtgatggacttcatccagtgggccaagagcaacggcgtaccggta
gggccgggccggggctcaggtgcgggctcgctggtggcctatgtgcagaagattaccgac
ctcgatccgctggaatatgatctgctgttcgagcggttcctgaacccggaacgggtctcg
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgcgtgatcgaatacgtg
gccgagaaatacggtcgcaatgccgtgagccagatcattaccttcggttccatggcggcc
aaggcagttatccgtgacgtggcgcgggtgcagggcaagtcttacggcctggctgatcgt
ctgtcgaagatgatccccttcgaagtcggcatgaccctggagaaagcctacgagcaagaa
gaaatcctgcgcgatttcatcaaggtcgatgaagaggccgccgaaatctgggacatggcc
cgcaagcttgaaggcgtggtgcgtaacgtcggcaaacacgccggtggcgtggtgatcgcg
ccgaccaagctgaccgacttttcgccgatctattgcgatgaggaaggcgacggcctggtg
actcagttcgacaaggatgatgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcgtaccttgaccatcatcgattgggccctcaagaccatcaatcgtgatcgcgccaag
gtcggcgaagaaccgctggatatcgcgtttatcccgctggacgacaagccgacctacagc
ctgctgcaaaaagccgaaaccaccgcggtgttccagctcgaatcccgtggcatgaaagag
ctgatcaaaaagctcaagcccgactgtctggaagacttgatcgcactggtggcgctgttc
cgtccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgtaagcacgggcgt
gccgaactcgcctacccgcactccgactaccagtacgaaggcctcaagccagtattggcg
ccgacctacggcatcattctgtatcaggaacaggtgatgcagatcgctcaggtgatggcc
ggctacaccctgggtggcgcggacatgctgcgtcgggccatgggtaagaaaaagcccgag
gaaatggccaagcaacgcggtggtttcattgaaggttgcgccaccaacaatatcgacgcc
gacctcgccggcaacattttcgacctggtggaaaaattcgccggttatggcttcaacaaa
tctcactccgccgcgtacggcctggtgtcgtaccagaccgcctggctcaaggcccactac
ccggcgccgttcatggcggcggtgctctcggccgatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagttgcgcctcgacgcaccggacgtgaacgcc
tccgaattcaagttcacggtcaacgatgaaggccgcatcatttatggcctgggcgccatc
aaaggcgtgggcgaaggcccggtggaagcgattaccgaggcgcgtcaggacggcccgttc
aaggatctgttcgacttctgcgcgcgggttgacctcaaacgcatcaacaaacggaccctc
gacggcttgatccgcagcggcgcactcgatcgtcttggcccgtacttccatgacgagccg
aaagcctaccaagctaatatcgaccgtaaccgtgcggtgttgctcacggcgatggaagag
gcgatcaaggccgccgaacaaaccgcccgcacccacgacagcggccacgccgacctgttt
ggcgggttgttcgtcgaagccgacgcggacgtctacgccaatcaccgcaaggccaaggag
ctgaccctcaaggaacgcctcaagggcgagaaggacaccctgggcctgtacctcaccggt
cacccgattgacgaatacgaaggcgaaatccgccgcttcgcccgccagcgcatcatcgac
ctgaaaccggcgcgcgatacccagaccgttgccgggatgatcattgcgctgcgggtgatg
aaaaacaaaaagggcgacaagatgggctttatcaccctcgacgaccgctctggtcggatc
gaagcgtcgctgtttgccgatgccttccattccgcccagtcactgctgcagaccgatgcg
atggtggtggtggaaggggaggtcagcaatgatgatttttccggtgggctacgcctgcgc
atcaagcgcgtgatgagcatggaagatgcgcgcaccaacctggcggaaagcctgcgcttg
aagttgcgcagtgaagcgctcaagggcgatcagctacgctggttgggcgacctgctcaag
cgccatcgcggtgcgtgcccggtgaccatggagtataccggcgcggacgcgaaggcgatg
ttgcagttcggcgagacatggcgtatcgacccggcggatggcttgattcaggcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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