Pseudomonas mucidolens: NCTC8068_01837
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Entry
NCTC8068_01837 CDS
T08935
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC8068_01837 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmud03019
]
NCTC8068_01837 (deaD)
03009 Ribosome biogenesis [BR:
pmud03009
]
NCTC8068_01837 (deaD)
Enzymes [BR:
pmud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC8068_01837 (deaD)
Messenger RNA biogenesis [BR:
pmud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC8068_01837 (deaD)
Ribosome biogenesis [BR:
pmud03009
]
Prokaryotic type
rRNA helicases
NCTC8068_01837 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
HVO_A0114
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
SQH32867
LinkDB
All DBs
Position
1:2012207..2013880
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEAIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagcc
gtcgcagcgactggctacgaagaaccttcggccattcagcagcaatcgatcccgatcatc
atggccggccaagacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgagagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtcactgttgtggccgtttacggcggcgcgccgatgggcccgcaactcaag
gcaatccgtaatggcgcacaaatcgttgtcgccaccccgggccgcctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgttgaagctgggcttcatggatgacctggaagccatcttcaaggcgctgccacccacc
cgtcagaccgtattgttctcggctaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagacagttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgtaccaagcaagccaccctggac
ctcgccagcgccctggaagccaaaggctacaaagctgctgcgctgaacggtgatatcgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggccttgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgatcctgaatcctacgttcaccgtatcggccgtaccggtcgtgcgggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgcgtgaccgggcagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtggctgatgctgaagcg
actcacggtgacctgctggatcgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagcgctgctgcgcaaggcgaccaatggccaggcgctgaccttggcagccatcgag
aaagaacgtccactggtgccgaacaacgctccgcgcggtgatcgtccagagcgttccggc
gaccgtccggaccgtggtgatcgtgagcgtcgtgcgccgatcccgttggccgaaggccgc
gctcgttgccgtaccgcgctgggtgcgcgggatggtatcgccgccaagaacctgctgggc
gctatcctcaatgagggtggtctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttctcgctggtggaactgccggaagatggtctggaaaaactgctgaccaagctgaag
gacacccgcgttgccggcaagcagctcaagctgcgtcgctatcgcgaagattga
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