Pseudomonas mucidolens: NCTC8068_02782
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Entry
NCTC8068_02782 CDS
T08935
Symbol
sbcC
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pmud
Pseudomonas mucidolens
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_02782 (sbcC)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC8068_02782 (sbcC)
Archaeal homologous recombinant proteins
NCTC8068_02782 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
nSTAND3
ABC_tran
AAA_15
PCNA_N
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
SQH33799
LinkDB
All DBs
Position
1:3109984..3113622
Genome browser
AA seq
1212 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LGDTGQAKMPDADSDISIGDPRTLIRRGTGGGYAEVDFVGVSGRRYRARWEANRARDKAG
GKLQNSRQSLIDLDSEQLLASQKTEYKTQLELALGLNFEQFTRAVLLAQSEFSAFLKAND
NERSELLEKLTDTALYTRLGRRAFDKAKDAKEAHKLLQDQATGVTPLAAEARAELDAHLN
EAQQQLKTRQAQLKQLELQHTWLKELREWQARQHSALEQLQQAERDWQGQAQQRLDMSRL
EQLAPQRHHFARQAELGHQLPPLLAQIRQHLEQEASLHTRQTQLQQQQGNAQNALSEALK
QQTEAVPLLRQAFEEHSTLARLTRDLSQSGEQKLLSEKACTEGQATLGTLHERQQQVTTR
LQQLSVQLEQSATLAPLGEAWNAYRDRLQQLMLIGNRLNQGQAELPTLEQQAALAQDQWT
QQRSALDLLYQEAGAEPHAVAEQIQLLDSLLKDNRKQQRAFEDLARLWDSQHQLEQRTQE
LADKQAKVQQQREQLNQAGLQTKAELSVAEQTLTVTRQLLERQRLARSASVEELRTQLQD
DQPCPVCGSVEHPYHQPEALLQNLTRHDEGEEANAQAAVDSLKEQLTELRADVGGLIAQQ
KEFLIQQEHLSSQLQALAPTLAAHPLSTALFNQDAARRGAWLSQQLSQLTQSISQDEQRQ
GALLNLQQNAGRLQQQLQAAQEASQLARQRLVDQQRELGNDRERLEEELNGFSELLPAQI
LEGLRREPAATFMQLDQQISQRLEQVGQQREELADHQQRQQTIEKELDRQQHRQQQLEVS
QQQFIELSNQQQAAQTRLSELLGTHTSAEQWQQQLEVAVEHARSSEAQASQALQDTRDQL
IQLAADLKARQAHQRALETEQQALALRLGDWRALHPDLDDASLAQLLSVDDQQASALRQQ
LQHSEKAVEQAKVLLQERDQRLKDHQALHNGNLEAEQLDSALTELNRQLNEGENNCAELR
ARQAEDQRRQDANQALALTIDKAYDEWQRWARLNALIGSATGDTFRKIAQAYNLDLLVHH
ANVQLRQLVRRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASMA
SSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQVK
RQGNGLSTLEVK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcgccatccgcctgaaaaacctggcctcgctggccggcccgtttgaaatc
gatttcaccgccgaacccttggccagcgccgggttgttcgcgattaccgggccgaccggc
gccggcaaaagcaccttgctcgacgcgctgtgcctggcgctgtttggcgcggtaccacgg
ttgggagacaccggccaggcgaaaatgcccgatgccgacagcgatatttccattggtgat
ccgcgcaccctgattcgtcgcggcaccggtggcggctatgccgaggtggatttcgtcggc
gtcagcggccgtcgctaccgtgcgcgctgggaggccaaccgcgcacgggacaaggccggc
ggcaaactgcaaaacagccggcaaagcctgatcgacctggacagcgagcaactgctggcc
agtcagaaaaccgaatacaagacccaactggaactggcgctgggtttgaatttcgagcaa
ttcacccgcgcggtactgttggcgcaaagtgagttcagcgcgttcctcaaggccaacgac
aacgagcgcagcgaactgctggaaaagctcaccgacaccgcgctctacacgcggttgggg
cgccgcgccttcgataaggccaaggatgccaaggaagcgcacaagctgttgcaggaccag
gccaccggcgtcaccccgctggccgccgaagcgcgggccgagttggacgcccacctgaac
gaagcccagcaacagctcaagacccgccaggcccagctcaagcagttggaactgcaacac
acctggctcaaggagttgcgcgaatggcaagcacgccagcacagcgcgctcgaacaactg
caacaggccgaacgggattggcaaggccaggcacagcaacgcctggacatgagccgtctg
gaacagctggcaccgcagcgtcatcacttcgcgcgccaggccgaactgggtcatcaattg
ccaccgctgctggcgcagatccgccagcaccttgagcaagaggcgtcgctgcacacacgc
cagacgcaattgcaacagcaacaaggcaacgcccaaaacgccttgagcgaagccttgaaa
cagcaaaccgaggccgtaccgctgctgcgccaggcattcgaggagcacagcaccctcgcg
cgcctgacccgcgacctgagccagagcggcgaacagaagctgctcagtgaaaaagcctgt
accgaaggccaggccaccctgggcacccttcacgaacgccaacagcaggtcaccacccgc
ctgcagcaattatccgtgcaacttgagcagagcgccacgctggcgccattgggcgaggcc
tggaacgcttatcgcgaccgtctgcaacagttgatgctgatcggcaatcgcctcaaccaa
ggccaggccgaactgcccacgctggaacaacaggcggcactcgcccaggatcaatggacg
caacagcgcagcgccctggacttgctctatcaggaggcgggagcggagccccatgcggtt
gccgaacagatccagttgctcgatagcttgctcaaagacaatcgcaagcaacagcgtgcc
ttcgaagacctggcacggttatgggacagccagcaccagctggagcagcgcactcaggaa
ctggcggacaaacaggcgaaggtccagcaacaacgcgaacaattgaaccaggcaggcctg
caaaccaaggcagagctgagcgtcgccgaacaaaccctgaccgtcacccggcaactgctg
gaacgccaacgcctggcccgtagcgccagcgtcgaagagctgcgcacacagttgcaggac
gaccagccctgcccggtctgcgggagcgtcgagcatccctatcatcagcccgaagccctg
ctgcagaacctgacgcggcacgatgaaggcgaagaagccaacgcgcaggcggccgtcgac
agcctcaaggaacaactgaccgaactgcgggccgatgtcggcgggctgatcgcccagcaa
aaagaattcctgatacagcaggaacacctgagtagccagctgcaggcgctggcgcccact
cttgcagcccatccactgtcgaccgcactcttcaatcaggacgccgccagacgcggcgcg
tggctgagccagcagttgagccagctcacccagagcatcagccaggatgagcagcgccaa
ggcgccctgctcaacctgcaacaaaacgccggccgcctgcagcaacaactgcaagccgcc
caggaggcgagccaactggcccgccagcgcttggtggaccagcaacgcgaactgggcaac
gaccgcgagcgcctggaagaggaactcaatggcttttccgagctgctgccggcgcagatc
cttgaaggcctgcggcgtgagcctgctgccacgttcatgcagcttgatcaacagatcagt
caacgcctggaacaggtgggccaacaacgtgaagagctggccgaccaccagcagcgccag
caaaccatcgagaaagaactggaccggcaacagcatcgccagcagcaattggaggtgtcg
caacagcaattcatcgagctaagcaaccagcagcaagctgcccaaacccggctgagcgaa
ctgctgggcacgcacaccagcgccgagcaatggcagcagcaactcgaggtggccgtcgag
cacgctcgcagcagcgaagcccaggccagccaagcgttgcaagacacgcgagaccaactg
atccaactggccgccgacctcaaggcccggcaagcacaccagcgcgccctggaaaccgag
caacaggcactcgcgcttcgtctgggcgactggcgcgcgttgcaccccgacctcgacgac
gcaagcctcgcccagctgttgagtgtcgatgaccagcaagccagtgcgctgcggcagcag
ttgcaacacagcgaaaaagccgtcgagcaagccaaggtactattgcaagaacgcgaccag
cgcctcaaggatcaccaggccctgcacaacggcaacctggaggccgagcagttggacagc
gcactgaccgaactcaaccgccagttgaacgagggcgaaaacaactgcgccgaactgcgc
gcccgtcaagccgaggatcagcgccgtcaagacgccaaccaggccctggcgctgacgatc
gacaaggcgtatgacgagtggcagcgctgggcccgcctgaatgcgttgatcggctcggcc
accggcgatacgttccgcaagatcgcccaggcctacaatcttgatttgctggtgcaccat
gccaacgtgcaactgcgccaactggtgcgccgctaccgcctcaagcgcgggggcagcatg
ctgggattactggtgctggacacggaaatgggggatgaactgcgctcggtgcattcgtta
tccggcggtgaaaccttcctggtgtcgttagcgctggccttggggctggcgtcgatggcc
tcgagcacgctgaagatcgagtcgctgtttatcgatgagggtttcggcagcctcgatccc
gagtcgctgcaattggcgatggacgcactggacggcttgcaggcacagggccgcaaagtc
gcggtgatttcccatgtgcaggaaatgcatgagcggattccggtgcagattcaggtcaag
cgccagggcaatggcttgagcaccctggaggtcaagtga
DBGET
integrated database retrieval system
