Pseudomonas mucidolens: NCTC8068_02889
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Entry
NCTC8068_02889 CDS
T08935
Name
(GenBank) peptidoglycan binding domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pmud
Pseudomonas mucidolens
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pmud01002
]
NCTC8068_02889
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pmud01011
]
NCTC8068_02889
Peptidases and inhibitors [BR:
pmud01002
]
Cysteine peptidases
Family C82
NCTC8068_02889
Peptidoglycan biosynthesis and degradation proteins [BR:
pmud01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
NCTC8068_02889
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
SQH33905
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All DBs
Position
1:complement(3225058..3226629)
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AA seq
523 aa
AA seq
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MFKKHACYLSLCLLVAPLVATADEGLIEPPNPVQLALAQLSSVCPGLAARLDVPAELRLQ
AFYQQQGNVGLWSQGQRRPALEEQLQLLADDGLAPAHYRLPDAVTTDNVLCTDFATSQTY
LQALHDLHYGRLQQAQFEPLWHSRPPEQDPVAQVLALASAGLVDMAAGFDQARPSATLYR
SLRDAYAAQRRQPVPEWGVVASGPLLRSGREDPRVPELARRLFNGGYLMSLPQGAADKYE
DELVEAVKAFQASHSLQADGVIGPDTVTQLNVSPTMRREQLRVNLERFRWLSRDLEPDGL
LVNVAAAQLSVYQGGVAVWQTRLQVGRADRQTPLLKSRITRLTLNPTWTIPPTIMREDKL
PAIRLNPEYLRQHNLNVLDSEGRPLSPEQVDWSHPGNILLRQDAGPRNPLGRIVLRFPNP
FSVYLHDTPSQPLFSRGPRAFSSGCVRVEQPMVLRDLLVSPAEKARTEQLLATGVTHEFR
LANPVPVLLGYWTVQVDSQGALLYAPDIYGRDPALLKALGTGL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaaaaacacgcatgttacttgagcctttgcttgctcgttgcaccattggtcgca
acagccgacgagggcctgattgagccgccaaacccagtacagctggctcttgcgcaattg
tcgagtgtttgcccgggtttagcggcgcggttggacgtgccagccgagttgcggttacag
gctttttatcagcagcagggcaatgtgggcctatggtcgcaaggccagcgtcgcccggca
ttggaggaacagttgcagctgttggccgacgacggcctggccccggcgcattatcgcctg
cctgacgcggtcaccaccgacaatgtgctctgtaccgatttcgcgaccagccaaacctat
cttcaagccctgcacgatctgcattacggccgcttgcagcaagcgcagttcgagccgctc
tggcattcccggcctccggaacaggaccctgtcgcccaggtgctggcattggcgagtgcc
gggctggtggacatggcggcggggtttgatcaggcgcggccgagtgccacgctgtatcgc
agcttgcgcgatgcgtatgccgcccagcgccggcaacccgtgcctgaatggggcgtggtc
gccagtgggccgttgttgcgctcgggccgggaagatccacgggtgccggagttggcccgg
cgcctgttcaacggtggctacttgatgagcctgccccaaggcgctgccgataaatatgag
gatgagctggtggaagcggtaaaggccttccaggcaagtcattccttgcaagccgatggt
gtgatcggcccggacaccgtgacgcagctcaatgtcagcccgacgatgcgtcgcgaacaa
ctgcgggtcaacctggaacgctttcgttggctgtcccgggacctggaacccgacggcctg
ttggtcaacgtcgccgccgcccagttgagcgtttatcagggcggcgtcgcggtctggcag
acgcgtttgcaagtcgggcgtgccgatcggcaaacgccattgctcaagtcgcgaatcacc
cggttgaccctgaatcccacctggacgattccgccgactatcatgcgcgaggacaagctc
ccggccattcgcctgaacccggagtacttgcgccaacacaatctgaacgtgctcgacagt
gaagggcgcccattgtcccctgagcaagtcgactggtcgcaccccggcaatattctgctg
cgccaggacgccggtccgcgtaatccgctgggcaggatcgtcttgcgttttcccaatccg
ttctcggtgtacttgcacgataccccgagccaacccttgttcagcaggggccccagggca
ttcagttcaggttgtgtgcgggtggagcagcccatggtgctgcgcgacctgctggtgagc
cccgcggagaaggctcgaaccgagcaattgttggctaccggagtcacccacgaattcagg
cttgccaacccggtgccggtgttgctggggtattggacggtgcaagtggatagccagggc
gccttgttgtacgcgccggacatttacggacgcgatccggcgttgctaaaggcgttgggg
acggggttgtag
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