Pseudomonas mucidolens: NCTC8068_03018
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Entry
NCTC8068_03018 CDS
T08935
Name
(GenBank) type VI secretion protein
KO
K11900
type VI secretion system protein ImpC
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NCTC8068_03018
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pmud02044
]
NCTC8068_03018
Secretion system [BR:
pmud02044
]
Type VI secretion system
Imp/Vas secretion system core components
NCTC8068_03018
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
SQH34034
LinkDB
All DBs
Position
1:3370902..3372377
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AA seq
491 aa
AA seq
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MSKSAAQQKTTENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVK
KAMVDRMIAEIDAKLSRQMDEILHHPDFQSLESSWRGLQLLVDRTNFRENIKIEILNVSK
EDLLDDFDDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSV
ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVP
RFLLRNPYDPEENPVKSFVYKETVTNSHEHYLWGNTTYAFGTKLTDSFAKFRWCPNIIGP
QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA
SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL
ELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADF
TLSLVGKLDKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagagtgcagcgcagcagaaaactaccgagaacggcgaatacagcattctcgac
agtatcatcgccgaaacccgcctgacgccggacgacgaagcctacgacatcgccaaacgc
ggtgtgtcagccttcattgaagagctgctcaagccgcagaacaacggtgagccggtcaag
aaagccatggttgatcgcatgatcgccgagatcgatgccaagctcagccgtcagatggac
gaaatcctgcaccacccggacttccagtctctggaatcgtcgtggcgcggcctacagtta
ttggtcgatcgcacgaactttcgcgaaaacatcaaaatcgaaatcctcaacgtctccaaa
gaagacctgctggacgatttcgacgattcgccggaagtaatgcaatcaggcctttacaag
cacatttacaccgctgaatacggtcagttcggcgggcagcctgtgggcgcgatcatcgcc
aactactttatgtctccgagctcgccggacgtgaagctgatgcagtacgtgtccagcgtt
gcctgtatgtctcacgcgccgttcattgctgcggccggtccgaagttcttcggcctggaa
agcttcaccggtctgccggacctaaaggatctgaaagatcacttcgaaggcccgcaattc
gccaaatggcagagcttccgtcaatccgaagattcgcgttacatcggcctgaccgtgccg
cggttcctcctgcgtaacccgtacgacccggaagaaaacccagtcaaatcgttcgtttac
aaagaaaccgtcaccaacagccacgagcattacctgtggggcaacaccacctacgcattc
ggtacaaaactgaccgacagcttcgccaaattccgctggtgtccgaacatcattggccca
caaagcggtggtgcagttgaagacctaccgttgcaccacttcgaaagcatgggcgaaatc
gaaaccaagattcctaccgaagttttggtcagcgaccgtcgtgaatacgaactggcagag
gaaggcttcatctccctgaccatgcgcaaaggcagcgacaacgcggcgttcttctccgcg
agctcggtgcagaagccgaagttcttcggcatcagcgctgaaggcaaggcagcagagctg
aactataagctcggtacccaactgccgtacatgatgatcgtcaaccgcctggctcactac
ttgaaagtgctgcagcgcgagcaactcggttcgtggaaagagcgtaccgacctcgagctg
gaactcaacaagtggatccgccagtacgtcgccgaccaggaaaatcccagcgccgaagtg
cgtggccgtcgtccactgcgcgcagcccagatcatcgtcagcgatgttgaaggcgagcct
ggctggtaccgcgtcagcctgaacgtgcgtccgcacttcaagtacatgggggccgatttc
accctgtcgctggttggcaagctggacaaagaataa
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