KEGG   Pseudomonas mucidolens: NCTC8068_03022
Entry
NCTC8068_03022    CDS       T08935                                 
Symbol
clpV1_1
Name
(GenBank) ClpB protein
  KO
K11907  type VI secretion system protein VasG
Organism
pmud  Pseudomonas mucidolens
Pathway
pmud02025  Biofilm formation - Pseudomonas aeruginosa
pmud03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pmud00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    NCTC8068_03022 (clpV1_1)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    NCTC8068_03022 (clpV1_1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pmud02044]
    NCTC8068_03022 (clpV1_1)
Secretion system [BR:pmud02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   NCTC8068_03022 (clpV1_1)
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 ClpB_D2-small AAA_22 AAA_16 NACHT AAA_7 nSTAND3 Sigma54_activat NBD_SMAX1 AAA_25 AAA_30 Clp_N AAA_24 Hpr_kinase_C SLFN-g3_helicase
Other DBs
NCBI-ProteinID: SQH34038
LinkDB
Position
1:3375688..3378300
AA seq 870 aa
MINVDLQQLIQALDAETRSDLESSAERCVARGGSKILVEDLLLGLLERPQGLLTRALLDA
EIDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTEVKQASLILALLR
NPMRYAGSRYQPLLAKLNIDRLKEFALSQKEQSETGKPAASGEFLLQRFTHNLTQQARDG
KLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQALKGV
ELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPRPIILFIDEAHTLIGAGGNAGGSDA
ANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQ
VYEKSHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLERL
RGELAEGGRQRQALRRDAEASLLIDREALDTLEARLEEAESELVALETLWTEQKTLAEHL
LELRQQLAKAREAALGTVIEALPVDEAQSVETLEVVLNETHKALTELQVKERLVSFEVCP
RLVAEVISAWTGVPLAQLAREHNVKVASFATDIGARIRGQEQAVHALDRAMRATAAGLNK
PDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGY
VGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGVANDGEGREIDFRNTL
ILMTSNLGSDHISELCENGARPSAEVLEETIRPVLSKHFKPALLARMRVVPYYPVGGPVL
RELIEIKLGRLGERLNRRQLDFTYSQGLVDHLAERCTQSDSGARLIDHLLDLHVLPLVAD
RLLDAMATGESLKRVHATLDGNASVICEFA
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgattaacgtagacctgcaacaactcatccaggcactggatgccgaaacccgtagtgac
ctggagagttccgccgaacgctgtgtggctcgtggtggcagcaagatcctcgtcgaagac
ctgctgctgggtttgctggaacgtccgcaaggcttgcttacccgtgcactgctcgatgct
gaaatagacgctggggaactcagtgcagcactgcaatcaagggtagagcacagtgcttca
cgtaatccggtgttcgccccggaactggtgcagtggctgcaagatgccctgctggtggcc
aaccttgaactgggccagaccgaggttaaacaggcttcactgattctcgcgttgctgcgt
aacccaatgcgctacgccggtagtcgctaccagcctttgctggccaaattgaatatcgac
cgcctgaaagagttcgcgttgtcccagaaagagcagtcggagaccggtaaaccggccgcg
tcaggtgagttcctgttgcaacgttttacccacaacctgacccagcaggcccgtgacgga
aaactcgaccctgtactgtgtcgcgacggtgctatccggcagatggttgacatccttgct
cggcgccgcaagaacaacccgattgttgtcggtgaagctggcgtcggtaaaacggccatc
gttgaaggcctggcctcgcgtattgctgctggtgaagtgccgcaagcgttgaaaggcgtc
gagttgctgtctctggacatgggcctgttgcaagccggtgccagcgtcaaaggtgaattc
gaacgtcgcctcaaaggtgtgattgacgaagtcaaagcgtcgccaaggccgatcattctg
ttcatcgacgaagcccataccttgatcggtgcgggcggtaatgccggtggctccgacgcc
gccaacctgcttaagccagcgctggcccgaggagagttacgcaccatcgctgcgactacc
tgggcggagtacaaaaagtacttcgagaaagaccctgcgctggctcgtcgattccagcca
gtgcaattgcacgaaccaactgtcagcgaggcggtgaccatcctccgtggcctggctcag
gtttacgagaaaagccatggcatctatttgcgtgatgacgcggtggtcgccgctgccgag
ttgtccgctcgttacctggcgggccgtcaactgccggataaagctgtcgacgtactcgac
accgcctgcgcccgtgtgcgcatcagcctcgcagcagctccggaaagcctggagcggctg
cgcggcgagctggcagagggtggccgtcaacgtcaggccctgcgccgcgatgccgaggca
agcctgttgatcgaccgcgaagcgctggataccttggaggcgcgcctggaagaagccgaa
tccgaattggtcgcgttggaaaccctatggaccgaacagaaaacattggctgagcatctg
ctggaactgcgccagcaactggccaaggcccgtgaagccgccttaggtaccgtaatcgaa
gccctgccggtagacgaagcgcaaagtgtcgaaacgctggaagtcgtgctcaacgaaact
cacaaagcgctgaccgagttgcaagtcaaagagcgcctggtgagctttgaggtctgcccg
cggcttgtggctgaagtgatcagcgcctggaccggcgtacccctggcgcagttggcccgt
gagcacaatgtcaaggttgccagcttcgctactgacatcggtgcccgcattcgtggtcag
gaacaagccgttcacgcccttgatcgcgcgatgcgcgctaccgccgccggcctgaacaag
cccgatgcacccgtgggtgtattcctgctggttggtccaagtggcgtcggcaagaccgaa
accgcactggccctcgctgatttgttgtacggcggtgatcgtttcatcaccaccatcaac
atgtccgaattccaggagaagcataccgtttcgcgcctgatcggtgcaccaccaggttac
gtcggctatggcgagggcggcatgctcacggaagccgtacggcagaaaccgtattccgtc
gtgctgctcgatgaagtcgagaaagccgaccctgacgtgctcaacttattttaccaaatc
tttgacaagggcgtagccaacgacggcgaagggcgcgagatcgattttcgcaatacgttg
attctgatgacctctaacctgggcagcgaccacatcagcgaactctgcgaaaacggcgca
cggccatcggctgaagtcctcgaagaaaccattcgcccggtgctgagcaagcacttcaaa
ccggcgctgttagcgcggatgcgtgtggtgccttactacccggtcggtgggccggtgcta
cgcgaactgatcgaaatcaaactcggtcgtctgggcgagcgcctgaaccgtcgtcagctc
gacttcacttactcacagggccttgtcgatcacctggccgaacgctgcacccaaagtgat
agcggcgcgcgtctgatcgaccatttgctggacctgcacgtactgccgttagtggctgat
cgtttgctggacgcgatggccaccggcgaaagcctcaagcgcgttcacgcaacgctcgac
ggcaacgccagtgtgatctgcgagttcgcctga

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