Pseudomonas mucidolens: NCTC8068_03635
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Entry
NCTC8068_03635 CDS
T08935
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC8068_03635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_03635 (mfd)
Enzymes [BR:
pmud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC8068_03635 (mfd)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC8068_03635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SQH34732
LinkDB
All DBs
Position
1:4033408..4036857
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAQALPDL
AIQAKANQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
TDRLSITIAPLDEGLQLDDPALALIAESPLFGQRVMQRRRREKRTDANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQVAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAQGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRLEFEAQTPVDPLVLIKLIQGQPSRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLLPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctactccctgccgaagcaggtaaacagcattggggcaac
ttgcccggtgccgccttgagcctggctatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctgaccgccgacagccaaagcgctgaacggctggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcatttcccggactgggaaaccctgccctacgatctg
ttctcgccgcatcaggacatcatttcccagcgcattgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccactgccctgcaccgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggacatcggccagaagctcgatgtcgagcag
atgcgcacgcgcctcgaggccagcggctaccggtgtgtcgacacggtgtacgagcacggc
gagttcgcggtgcgcggggcgctgatcgacctgtttccgatgggcagcaaattgccgtac
cggatcgacctgttcgatgacgaaatcgagaccctgcgtacgttcgacccggaaaaccag
cgctccatcgacaaggtcgaatcggtcaagctgctgccagcccgggaattcccgctgcaa
aaagacgcggtcacccgtttcaaggcacgctttcgcgagcgcttcgacgtggatttccgg
cgctgcccgatctttcaagacctgagcagcgggatcactccggcgggtatcgagtattac
ctgccgctgttcttcgatgaaacctcgaccctgttcgattacctgccacaggacacacaa
gtgttctcgctgcccggtatcgaacaggcagcggagaacttctggaacgatgtacgtaat
cgctatgaagagcggcgcgttgatccatcccgtcctttactgccacccgccgagttgttc
ctgccggtggaagactgtttcgcccgcctgaaaagctggccgcgtgtagtcgccagtcaa
caggacgtggaaaccggcgtcggccgtgagcgctttcccgcgcaagcgctgccagacctg
gcgatccaggccaaggccaaccaacccctggaagcgctctccaacttcctcggcgacttt
cccggccgtgtgctgttcaccgccgaatccgccggtcgccgcgaagtgttgctggagctg
ttggaacgcctgaaactgcgtccgaaaaccgtcgacagctggccggactttgtcgctggc
acggaccgcctgtcgatcaccatcgcaccgctggacgaaggcctgcaactggatgacccg
gccctggcgctgattgccgaaagcccgctgttcggtcaacgtgtgatgcagcgcaggcgt
cgggagaaacgcaccgacgccaataacgacgccgtgatcaagaacctcaccgagttgcgt
gaaggcgcgccggtggtgcatatcgaccacggtgtcgggcgctacctcggtttggcgacg
cttgaaatcgacaatcaggtcgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggtagcgacgatgcc
ctggcgccattgcaccgcctcggttctgaaacctggcagaaagccaagcgcaaggccgcc
gagcaagtgcgcgacgtcgccgccgaactgctggacatctatgcccgccgcgcggcacgc
gagggttatgcgtttgccgatcctaaagccgactacgcgaccttcagcgccggctttgcc
tttgaagaaaccccggatcagcaaaccaccatcgacgccgtgcgcgccgacatgctggcg
cccaagccgatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgcctttatcgcggtgcacggcggtcgccaggtggccattctggtccccacc
accctgctcgcccagcagcattacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgtttcaagtccaccaaagaagtcaacgccgccgttgccgac
ctggcgcaaggcaagatcgacatcgtcatcggtacgcacaagctgttgcaagacgatgtg
aagatcaaaaacctcggcctggtgatcatcgacgaagaacaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagtgaagtcgacatcctgaccctcaccgccacgccg
atcccgcgcacgctgaacatggcggtatcgggcatgcgtgatctgtcgatcatcgccacg
ccaccggcgcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacggtc
aaggaagcgttgctgcgcgagctactgcgtggtgggcaggtttattacctgcacaacgac
gtaaagaccatcgagaaatgcgccgccgaattggccgaattggtgccggaagcgcggatc
ggcatcggtcacggacagatgcgcgagcgcgaactcgaacaggtgatgagtgacttctat
cacaagcgcttcaacgtactgattgcctcgaccatcatcgagaccggtatcgacgtaccg
agcgccaacaccatcatcatcgaacgggccgacaagttcggcctggcacagttgcaccag
ctacgcggccgggtcgggcgcagccaccaccaggcgtatgcgtatctgctcacgccgcca
cgccagcagatcacctccgacgccgaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgcgggttttgtactagccaccaacgatctggaaatccgtggtgccggcgaactg
ctgggagacggccagagcgggcagattcaggcggtcggtttcacgctgtacatggaaatg
ctcgaacgcgcggtgaaagccatccgcaagggtgagcaaccgaaccttgatcagccgctg
ggtggcggtccggaaatcaacctgcgcttgccggcgttgattcccgaagactacttgccg
gacgttcacgcacgattgatcctgtataaacgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaggtcgagatgatcgaccgcttcggcctgttaccggagccgaccaag
aacctggtgcgcctgacgctgctcaaattgcaggccgagcaacttggcatcaagaaggtc
gacgccggccctcaaggtgggcgcctcgagttcgaagcgcagacgccggtggacccgctg
gtgctgatcaagctgattcaaggccagcccagtcgttacaagttcgagggcgctacgcta
ttcaaattcatggtgccgatggaacgtgccgaagaacgctttaatacactggaggcgctg
tttgaacgcctcctcccgaaatctgcttga
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