Pseudomonas mucidolens: NCTC8068_03800
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Entry
NCTC8068_03800 CDS
T08935
Symbol
ntrC_2
Name
(GenBank) transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud02020
Two-component system
pmud02025
Biofilm formation - Pseudomonas aeruginosa
pmud02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC8068_03800 (ntrC_2)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NCTC8068_03800 (ntrC_2)
09142 Cell motility
02040 Flagellar assembly
NCTC8068_03800 (ntrC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmud03000
]
NCTC8068_03800 (ntrC_2)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pmud02035
]
NCTC8068_03800 (ntrC_2)
Transcription factors [BR:
pmud03000
]
Prokaryotic type
Helix-turn-helix
Other families
NCTC8068_03800 (ntrC_2)
Bacterial motility proteins [BR:
pmud02035
]
Flagellar system
Flagellar assembly proteins
Others
NCTC8068_03800 (ntrC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_7
nSTAND3
bpMoxR
AAA
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
SQH34920
LinkDB
All DBs
Position
1:complement(4195949..4197424)
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AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVSSLSSSREVICVLIGTV
NAPGAVLGLLKTLSTWDEFLPVLLMGDISSVELPEDQRRRVLSTLEMPPSYSKLLDSLHR
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRRDGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSADVRIIAATHKNLESMIEVGSFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVNSLRSDLEERVAINGHAPD
FSASALLPPEGLDLKDYLGSLEQGLIQQALDDAGGIVARAAERLRIRRTTLVEKMRKYGM
SRREGDEQADD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaattctgctaattgatgacgatagcgttcgtcgccgcgatctg
gcggtgattttgaattttcttggtgaagaaaatttgccctgcggcagccacgattggcag
caggctgtcagctcgttgtcgtcgagccgtgaagtcatttgtgtgctgatcgggacggta
aacgctcctggcgcggttcttggcctcctaaagacactctcaacctgggatgagttcctt
ccggtgttgctaatgggtgatatttcttccgtggagcttccggaagaccagcgccgccgc
gtgctttccaccctggaaatgcctcccagctacagcaaattgctcgattccctgcaccgt
gcccaggtttaccgcgagatgtatgaccaggcccgcgagcgcggccgtcaccgcgaaccc
aatctgttccgcagcctggtcggcaccagtcgtgccatccagcacgtgcgccagatgatg
cagcaagtggccgataccgatgccagcgtactgatccttggcgaatccggtaccggcaag
gaagtggtcgcgcgcaacctgcattaccactccaagcgccgtgacgggccatttgtgccg
gtcaactgtggggcgattcccgcagagctgctggaaagcgaactgttcggccacgagaag
ggcgcctttaccggggcgatcaccagccgtgccggacgctttgaactggccaatggcggc
acgctgttcctcgacgaaatcggcgacatgccgttgccgatgcaggtcaagttgttgcgc
gtgttgcaggagcgcactttcgagcgggtgggcagcaacaagacccaaagcgccgacgtg
cgcatcattgccgcgacccacaagaacctcgaaagcatgatcgaggtcggcagcttccgc
gaagacctctattaccgcctcaatgtattcccaatcgagatggcgccgctgcgtgagcgc
gtggaagacatcccgttgctgatgaacgaactgatctcgcgcatggagcacgaaaagcgc
ggctcgatccgtttcaactcggcggcgatcatgtccctgtgccgtcacggctggccgggc
aacgtccgcgagctggccaatctggtggaacgcatggcgatcatgcacccatacggggtg
attggcgtggtcgaattgccgaagaagttccgttatgtcgatgacgaagacgagcagtta
gtaaacagcctgcgcagcgacctggaagagcgggtagccatcaacgggcatgccccggac
tttagcgccagcgccctgttgccccccgaaggcctggacttgaaggactacctcggcagt
ctggagcaagggttgatccagcaggctctggatgacgccggcggtatcgtcgcccgtgcc
gccgagcgtttgcgtatccgtcgtaccaccctggtcgagaagatgcgcaagtacggcatg
agccgtcgtgaaggtgatgaacaggcggatgattga
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