Pseudomonas mucidolens: NCTC8068_04008
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Entry
NCTC8068_04008 CDS
T08935
Symbol
fadD1
Name
(GenBank) acyl-CoA synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud00061
Fatty acid biosynthesis
pmud00071
Fatty acid degradation
pmud01100
Metabolic pathways
pmud01212
Fatty acid metabolism
pmud02024
Quorum sensing
pmud04146
Peroxisome
Module
pmud_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
NCTC8068_04008 (fadD1)
00071 Fatty acid degradation
NCTC8068_04008 (fadD1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
NCTC8068_04008 (fadD1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
NCTC8068_04008 (fadD1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pmud01004
]
NCTC8068_04008 (fadD1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmud04147
]
NCTC8068_04008 (fadD1)
Enzymes [BR:
pmud01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
NCTC8068_04008 (fadD1)
Lipid biosynthesis proteins [BR:
pmud01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
NCTC8068_04008 (fadD1)
Exosome [BR:
pmud04147
]
Exosomal proteins
Exosomal proteins of breast milk
NCTC8068_04008 (fadD1)
Exosomal proteins of breast cancer cells
NCTC8068_04008 (fadD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
SQH35205
LinkDB
All DBs
Position
1:complement(4397395..4399086)
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AA seq
563 aa
AA seq
DB search
MIEDFWKDKYPAGIAAQINPDEYPNIQAVLKQSCQRFANKPAFSNLGKTITYGELFELSG
AFAAYLQQHTDLQPGDRIAVQLPNVLQYPVAVFGAIRAGLIVVNTNPLYTAREMEHQFND
SGAKALVCLANMAHLAEKVVPKTSVKHVIVTEVADLLPPLKRLLINSVIKYVKKMVPAYH
LPQALKFNDVLAKGHGKPVNEANPDSDDVAVLQYTGGTTGVAKGAMLTHRNLVASMLQCK
ALMGSNLHEGCEILITPLPLYHIYVFTFHCMAMMLIGNHNILISNPRDLSAMVKELSKWK
FSGFVGLNTLFVALCNNDAFRKLDFSALKVTLSGGMALQLAAAERWKAVTGCSICEGYGM
TETSPVATVNPIQNIQIGTIGIPVPSTLCKVISDDGAELPLGEIGELCVKGPQVMKGYWQ
REDATAEILDSEGWLKTGDIAIIQPDGYMRIVDRKKDMILVSGFNVYPNELEDVLAGLPG
VLQCAAIGVPDEKSGEHIKLFIVVKPGATLTKEQVMEHMRANVTGYKVPKAVEFRDALPT
TNVGKILRRELRDEELKKLGLKK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagacttttggaaggataagtaccccgccgggattgctgcacagatcaatcca
gacgagtatccaaatattcaggcggtactaaaacagtcctgccagcgcttcgccaacaaa
ccggctttcagcaacctgggaaagacaatcacctacggtgagttgtttgaattgtccggc
gcttttgccgcgtatctgcaacagcataccgacttgcagcccggtgatcgaatcgccgtg
caattgcctaacgtcctgcaatacccggttgcggtattcggcgctatccgtgccggcctg
atcgtggttaacaccaacccgctgtacaccgcgcgggaaatggaacaccagttcaatgat
tccggcgccaaggctttggtgtgcctggcgaacatggcgcatctggctgagaaagtcgta
cccaagacctccgtcaagcatgtgatcgtcaccgaagtggccgacctgttgccgccgctc
aagcggttgttgatcaacagtgtcatcaagtacgtgaagaaaatggtcccggcctatcat
ttgccccaggccctcaagttcaatgatgtcctggccaaggggcatggcaagcccgtcaac
gaagccaatcccgacagcgatgatgtcgcagtgctgcaatacactggcggcaccaccggc
gtggccaagggcgcgatgctgactcaccgcaacctggtggccagcatgctgcagtgcaag
gcgctgatgggctctaacctgcacgaagggtgcgagatcctgatcacgccgttgccgctg
tatcacatttatgtcttcacctttcattgcatggcgatgatgttgatcggtaaccacaac
atcctgatcagcaacccgcgcgacctgtcggcgatggtcaaggaactgtcgaagtggaag
ttcagcgggtttgtcggactgaacaccttgttcgtggccctgtgcaacaacgacgccttc
cgcaagctggatttttccgcgctgaaagtcaccctgtcgggcggcatggccctgcaattg
gcagcggcggagcgctggaaagcggtcaccggctgctccatttgcgaaggttacggcatg
actgaaaccagcccggtggccaccgtcaacccgatccagaatatccagatcggtaccatc
ggtattccggtgccgtcgaccctgtgcaaagttatctcggatgacggtgccgagttgccg
ctgggcgaaatcggcgagctgtgcgtcaagggcccgcaggtgatgaagggctactggcag
cgtgaagatgccaccgccgaaatcctcgacagcgaaggctggttgaagaccggggatatt
gcgatcatccagcctgacggctacatgcgcattgtcgaccgcaagaaagacatgattctg
gtctccggtttcaacgtctatcccaacgagctggaagatgtgctggcggggcttccgggc
gtactgcaatgcgccgccattggtgtgccggacgagaagtcgggtgagcacatcaagctc
ttcatcgtggtcaaaccgggtgcgacgctgaccaaggagcaagtgatggaacatatgcgc
gccaacgtcaccggctacaaggtgccgaaggccgttgagttccgcgatgcgttgccgacc
accaacgtcggcaagatcctgcgccgtgagttgcgggacgaagagctgaaaaagctcggg
ctgaaaaagtaa
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