Prevotella multiformis: J4864_04840
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Entry
J4864_04840 CDS
T07481
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmuf
Prevotella multiformis
Pathway
pmuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4864_04840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuf03019
]
J4864_04840
03009 Ribosome biogenesis [BR:
pmuf03009
]
J4864_04840
Enzymes [BR:
pmuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4864_04840
Messenger RNA biogenesis [BR:
pmuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4864_04840
Ribosome biogenesis [BR:
pmuf03009
]
Prokaryotic type
rRNA helicases
J4864_04840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
CMS1
Cas3-like_C_2
SHE10_OSW_C
Motif
Other DBs
NCBI-ProteinID:
QUB70378
LinkDB
All DBs
Position
1:1199648..1201549
Genome browser
AA seq
633 aa
AA seq
DB search
MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP
LLQRIDTGSKDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR
HGVQIIVATPGRLIDLMHRGKARLDKVTNVVLDEADEMLNMGFQESITEILTGVPEDRNT
LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALKRLVDFY
PKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATD
VAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNIERE
IGKEFVDGTLPTPEEICKKQLFKTMDDILKTDVDEEQIEPYMTDINRQFEYIDKEDIIKK
IVTATFGRFLNYYKNAPEIEKPSSRSSRESSRSGRGEGKSGRSRGQRKAENGYRRLFINL
GKTDGFYPGEVMQFINKNVHGHQEVGHIDLLSKQSYIEVPEQDAQKVMRALDGTTYKGRK
VRCNDAEEGGHGRSDRGRAASGRGGYGSRGEGRQDSRERKGRSRREPEEDFSFAQHKFKK
DDWKELMKGATAKLKGEEPDFSEEGWARRRPKK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagagttgggtgtgagcgaagagattcgccgcgccatcagtgagctt
ggatttgaacatccaatgcctgtacaggaagaagtaatcccctatctgctcggtaaccga
aacgacgtcatcgcactggcacagaccggtacgggcaagacggccgcattcggcctgccg
ctgctgcaacggatcgacaccggcagcaaggacactcaggcggtagtgctgagtccgaca
cgtgagctttgtctgcagattgcagacgacctgaaggatttcggcaagtacatcccccat
ctgcacatcgccgccgtctatggcggtgcctccatcgagacgcagattcatcagctgcgc
catggcgtacagatcatcgtggctacgccgggccgtctcatcgacctcatgcaccgcggc
aaggcacgcctggacaaggtgacgaacgtcgttctggacgaggccgacgagatgctgaac
atgggcttccaggagagcatcaccgagatactgaccggtgtgcccgaagaccgcaacacc
ctgctgttctcggctacgatgagccgtgacgtggaacgggtggcaaagggctatctgcac
gactacaaggaaatcgtcgtgggcagccgcaacgagggtgcggagaatgtcaaccacatc
tattacatggtgaatgcccgcgacaagtaccttgccctgaagcggctggtggacttctat
ccgaagatctacgccatcgtcttctgccgcacgaaggtggagacgcaggaaattgccgac
aagctgatcaaggacggctacaacgccgaatcgctgcacggcgacctctcccagcagcag
cgcgacctcacgatgcagaagttccgttcgcacctcacgcagatcctcgtggcaacggac
gtggcggcacgcggactggatgtgaacgacctgacacacgtcatcaattacggcctgccg
gacgacatcgagaactacacccaccgttccggacgtacaggccgtgcgggcaagaagggc
acgtccatctcgatcatccactcccgggagaagcacaaggtgcgcaacatcgaacgggaa
atcggtaaggagttcgtggacggcacgctgccgacaccggaagaaatctgcaagaaacag
ctgttcaagaccatggacgacatcctgaagacggatgtcgacgaggaacagatcgaacca
tacatgacggacatcaaccgccagttcgagtacatcgacaaggaagatatcatcaagaag
atcgtcacagccactttcggacgtttcctgaactactacaagaatgcgccggagatagag
aaaccgtcgtcacgcagctcacgggagagttcccgcagcggccgcggagagggaaagtcc
ggacgcagccgcggccagcgcaaggcagagaacggctacagacggctgttcatcaacctc
ggcaagaccgacggattctatccgggcgaggtgatgcagttcatcaacaagaacgtacac
ggccatcaggaggtaggacacatcgacctgctgtccaaacagagctacatcgaagtgccg
gaacaggatgcacagaaggtgatgcgggcactggacggcacgacgtacaagggacgcaag
gtacgctgcaatgacgctgaagaaggcgggcatggacggtcggacagaggccgggcagcc
agcggccggggcggttacggaagccggggagaaggacggcaggacagccgggagcgcaag
ggacgcagccgccgggaaccggaagaggacttctccttcgcacagcacaagttcaagaag
gacgactggaaggaactcatgaagggggcgacggccaagctgaaaggcgaggaaccggac
ttctcggaggaaggctgggcacgccgccggccgaagaagtag
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