Prevotella multiformis: J4864_05250
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Entry
J4864_05250 CDS
T07481
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmuf
Prevotella multiformis
Pathway
pmuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4864_05250 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuf03019
]
J4864_05250 (rnr)
03016 Transfer RNA biogenesis [BR:
pmuf03016
]
J4864_05250 (rnr)
Enzymes [BR:
pmuf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J4864_05250 (rnr)
Messenger RNA biogenesis [BR:
pmuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4864_05250 (rnr)
Transfer RNA biogenesis [BR:
pmuf03016
]
Prokaryotic type
tRNA degradation factors
J4864_05250 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_Dis3
OB_RNB
OB_RNR_1st
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QUB70453
LinkDB
All DBs
Position
1:complement(1311400..1313676)
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AA seq
758 aa
AA seq
DB search
MRKEKKDSRRLTKKQLSEKLTALFQSQPDETFSFKQIFHALKLKTHPAKMLAIDVMEEMA
WDDFLSKVGDGAYTLNTKGQVQEGTFIRKANGKNTFLPDDGGTPVFVSERNSMAALNGDH
VRVQFMARRQNHIKEAMVIEILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILIPKKKL
KGGKTDDRALVKITRWPDADHKNLVGEVVDVLGKAGDNDVEMNTILAQYGLPYKYPKRVE
QAAEKISAEITEQDFKEREDFRDVWTCTIDPKDAKDFDDALSVRKLKNGLWEVGVHIADV
SHYVKEGDIIDREAQQRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDEE
ANVKAYRIVHTVIKSNRRYAYEEAQQLLEDNGVVDGTGEPAPKPGKAGYKGEYAEEVITL
DRLAKLLRARRFKKGSVKFDSEELHFDVDEKGKPIRCYFKRSKDANKLIEEFMLLANKTV
AESIGITEKGKKAKTLPYRVHDNPDPQKFENLREFTAKFGYKLKSSSTKGATARALNKLM
DEVQGKREAKVIQMIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLIT
RYQQGGRSANKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMGDRIGECYDAHISGIQ
SFGIYAEIDENHCEGMIPMRDLDDDYYEFDEKNYCLVGRRHHHVYRFGDPVRIQVAKADL
ERRQLDFTLDDGRPPKVRQAAADAAGYGRKKGKKRRRR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaagaaaagaaagacagcaggcgactgaccaagaagcagctttcggagaagctg
accgctctcttccagtcgcaacccgacgagacattcagcttcaaacagatattccatgca
ctgaaactgaagacgcatccggccaagatgctggcaatagacgtgatggaggagatggcc
tgggacgacttcctgtcgaaggtgggcgacggcgcttatacgctcaacaccaagggacag
gtgcaggaaggtacgttcatccggaaggcgaacggcaagaatacgttcctgcccgatgac
ggcggaacaccggtcttcgtctccgaacgcaactccatggctgccctgaacggcgaccat
gtgcgggtacagttcatggcccgccgtcagaaccacataaaggaggcaatggtcatcgag
atactgcaacggaagaaagacaccttcgtaggaaggttgcgggtcgagaaggacattgcc
ttcctcgtaacacaggagaacctcttcatccatgacatcctgattccgaagaagaagctg
aaaggcgggaagacggacgaccgtgcgctggtgaagattaccaggtggccggatgccgac
cacaagaacctcgtgggtgaggtggtggatgtgctgggcaaggccggcgacaacgacgtg
gagatgaacaccatcctcgcccagtacggtctgccttacaagtatccgaaacgtgtcgaa
caggctgccgagaagatcagtgccgagattacggagcaggacttcaaggaacgggaggac
ttccgggacgtgtggacctgcacgatagacccgaaggatgcaaaggacttcgacgatgcg
ctctctgtccggaagctgaagaacggactgtgggaagtgggcgtacacatcgccgacgtg
tcgcattatgtgaaggaaggagatatcatcgaccgtgaggcgcagcagagggcgacatcg
gtctatctcgtcgaccgcaccatcccgatgcttcccgagcggctgtgcaacttcatctgt
tcgctccgcccggacgaggaaaagctcgctttcagctgcatcttcaacctggatgaggag
gccaacgtgaaggcttaccgcatcgtgcatactgtcatcaagtcgaaccgccgttatgcc
tacgaagaggcacagcagctgctggaggacaacggggtggtggacggtacgggcgagcct
gccccgaagcccgggaaagccggttacaagggcgaatatgccgaagaggtgattacgctc
gaccgccttgcgaaacttctccgtgcccgccgcttcaagaaggggagcgtcaagttcgac
tcggaagagctccacttcgacgtggatgagaaagggaagcccatccgctgttacttcaag
cggtcgaaggatgcaaacaagctcatcgaggaattcatgctcctggccaacaagactgtg
gccgaaagcatcggaataacggagaaagggaagaaagcgaagacccttccttaccgtgtc
catgacaatcccgacccgcagaagttcgagaacctgcgtgagtttaccgccaaattcggc
tacaagctcaagtcgtccagcaccaagggggctactgcccgtgcgctgaacaagctgatg
gacgaggtgcagggcaagcgggaggcgaaagtgatacagatgatcgcgctccgttcgatg
atgaaggcgaaatacaccacacacaacatcggacacttcggactggcctttgactattac
acccacttcacctcgccgatccggcgttacccggatacgatggtccaccgcctgatcacg
cgctaccagcagggcgggcggtctgccaacaaggagcattacgaggagctgtgcgagcat
tgttcggacatggagctcgttgcccagaatgcggaacgcgactccatcaagtacaagatg
gtggagttcatgggcgaccgcatcggtgaatgctacgatgcacacatctccggcatccag
agcttcggcatctatgcggagatcgatgagaaccactgcgagggcatgataccgatgcgc
gacctcgatgatgactattatgagttcgacgagaagaactactgccttgtcggccgacgg
catcaccacgtctaccggttcggcgatcccgtccgcatccaggtggcgaaagctgacctg
gaacgtcgccagctcgacttcacgctcgacgacggccgtccgccgaaggtcaggcaggcc
gccgccgatgcggccggatatggaaggaaaaagggaaagaaaaggcgcaggaggtaa
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