Prevotella multiformis: J4864_09610
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Entry
J4864_09610 CDS
T07481
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmuf
Prevotella multiformis
Pathway
pmuf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4864_09610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmuf03400
]
J4864_09610 (mfd)
Enzymes [BR:
pmuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4864_09610 (mfd)
DNA repair and recombination proteins [BR:
pmuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4864_09610 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_16
RecG_dom3_C
UB2H
DctP
Cas3-like_C_2
AAA_22
Zeta_toxin
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QUB71409
LinkDB
All DBs
Position
2:835628..839176
Genome browser
AA seq
1182 aa
AA seq
DB search
MKIQDIRKLYAMLPQAEAVRKVQEDASVKTVFLQGLVASAAPVFFASVAERWKATTVFVL
NDSDEAGYFYNDLRTVAMPEDGEDRVADVLFYPSAYRRAVKYGQRDAGNEILRTEVLTRL
SALASEKERPLPLFIVTEPSALAELVVSKRQLDERRLTLAVGQHTGIVEVEKTLRSFGFS
ETDYVYEPGQFAVRGSIIDVYSYSNELPFRIDFFGDDIETVRTFEVETQLSDRKLERVEI
VPELTTLSEEKVPFLHFLPEDAVLAFKDFLYVRDAIDRIYQEGFTSQAVTEKLEGKTEME
QRELEQAFRREGLLVPASRWMSDALDFRRIEFGAGRSVPEPAGKDDGSRAAVGFATSPQP
LFHKNFDLLSKTLRDYLLQGYRLYIFADSEKQTARLRDIFDSRSGGGSAADSENLSVADG
VSASAGANGGSIPFTPVNRTLHEGFVDGTLKVCFFTDHQIFDRFHKYSLKSDRARQGKMA
LTMKELQEMEPGDFLVHVDFGIGRFAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYK
ISKYRRGDTGEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIRLYARRRREKGFAFSPDS
FMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAA
DNKQVAVLVPTTVLAFQHYQTFRKRLKDMPVRVDYLSRARSPKQTRQVLADLAEGKIDIL
VGTHKLIGKSVKWHDLGLLIIDEEQKFGVATKEKLRQLKTNVDTLTMSATPIPRTLQFSL
MGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAVNFEMSRNGQVYFVNDRISNLQEIAG
LIRKYVPDCRVAVGHGQMKPEELEETVMGFMNYDYDVLLSTTIVENGIDIPNANTIIIND
AHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDLGSGFNLAM
QDLDIRGAGNLLGAEQSGFMEDLGYETYQKILSQAVMELKNDEFQDLYAEEMGEGKQITG
DDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDSDLEAYRRRLQDRFGPVPR
QGEELMQVVALRRVGKRLGCEKIILKQGRMQMQFVSNPRSMYYQSAAFGKVLDYIGQHPR
RCSLKEKNGKRSMVVGDVKTVEDGVKVLREIESGTRTLPSAG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaagatacaggatatacggaaactatacgctatgctgccgcaggcagaagcggtacgg
aaggtacaggaagacgcgtcggtgaagacggttttcctgcagggactcgtggcgtcggcg
gccccggtgttctttgcgtcggtcgctgaacggtggaaggcgacgaccgtcttcgtgctg
aacgacagcgatgaggccggctatttctataacgacctcaggacggtcgccatgccggaa
gacggagaggacagggtggcggatgtgctcttctatccctcggcctaccggcgcgccgtg
aagtacgggcagcgcgatgccggcaacgagatactgcggacggaggtgctgacgcggctc
tccgccctggcttcggagaaggagcgcccgctgccgctcttcatcgtgaccgagccgtcg
gccctggcggagctggtggtgtcgaagcggcagctggacgaacggcggctgacgctggcc
gtcggacagcacaccggcatcgtcgaggtggaaaagaccctgcggtcgttcggattcagc
gagaccgactatgtctacgaaccgggacagttcgccgtgcgcggcagcatcatcgacgtg
tattcctactcgaacgagctgccgttccgcatcgacttcttcggcgacgacatcgagacc
gtccgcacgttcgaggtggagacgcagctctctgacaggaagctggagcgggtggagatc
gtacccgaactgacgacgctgtcggaagagaaggtgccgttcctgcatttcctgccggaa
gacgccgtgctggctttcaaggacttcctctatgtgcgcgatgccatagaccggatttac
caggaggggttcacctcgcaggccgtgacggagaagctggagggaaagacggagatggaa
cagcgcgagctggagcaggccttccgccgggagggactgctcgtcccggcctcgcgctgg
atgagcgacgccctggacttccgccgcatcgagttcggcgccggccgttccgtccccgaa
ccggccgggaaggacgacggcagccgggcggcggtcggcttcgccacctccccgcagccc
ctcttccacaagaacttcgacctcctgtcgaagaccctccgcgactacctcctccagggg
tacaggctctacatcttcgccgacagcgagaagcagacggcacgcctgagagatattttc
gactcccggtccggcggcggttcggcggcagactccgagaacctgtcggtggcggacggc
gtctccgcctctgccggggcgaacgggggctccatccccttcaccccggtcaaccgcacg
ctgcacgagggcttcgtcgacggcacgctgaaggtgtgcttcttcaccgaccaccagatc
ttcgaccgtttccacaagtacagcctcaagtcggacagggcgcggcagggcaagatggcc
ctgacgatgaaagagcttcaggagatggagcccggcgacttcctcgtccacgtggacttc
ggcatcggccggttcgccgggcttgtccgtgtgccggccggcgactcctaccaggagatg
atccgcctcgtctatcagcacaacgacatcgtcgacgtgtccatccactcgctgtacaag
atcagcaagtaccgccgcggcgacaccggagagccgccccgcctgtcggttctcggttcg
ggcgcatgggaccggctgaaggagaaggcgaagaagcgcatcaaggacatcgcgcgcgac
ctcatccgcctctatgccagacggcggcgggagaaggggttcgccttctcgcccgactcg
ttcatgcagcacgagctggaggcttcgttcctctacgaggacacccccgaccagctgaag
gccacgcaggaactgaagcaggacatggagagcgcacgcccgatggaccgcctcgtctgc
ggcgacgtgggcttcggcaagacggaggtggccatccgcgccgccttcaaggccgccgcc
gacaacaagcaggtggcggtgctcgtgccaacgaccgtgctggccttccagcattaccag
acgttccggaagcggctgaaggacatgccggtgcgggtagactacctctcacgggcccgc
agcccgaagcagacccggcaggtgctggccgacctggcggaggggaagatcgacatcctc
gtcggcacgcacaagctgatagggaagtccgtgaagtggcacgacctcgggctgctcatc
atcgacgaggaacagaagttcggcgtggcgacaaaagagaagctgcggcagctgaagacg
aacgtcgacacgctcaccatgtcggcgacgccgatcccgaggacactgcagttctcgctg
atgggggcgcgcgatatgagcatcatgcgcacgccgccgcccaaccgctatcccatccag
accgagatagcctctttctcgcacgaggtgatcgccgacgccgtcaacttcgagatgagc
cgcaacgggcaggtctacttcgtcaacgaccggatcagcaacctgcaggagatcgccggt
ctcatcaggaagtacgtccccgactgccgagtcgccgtcgggcacggacagatgaagccc
gaggagctggaggagaccgtgatggggttcatgaactacgactatgacgtgctgctctcg
acgaccatcgtggagaacggcatcgacatccccaatgccaataccatcatcatcaacgac
gcccaccgcttcggactctccgacctgcaccagatgcgcggacgggtgggacgctccaac
aaaaaggccttctgctacctgctggcgccgccgctggccgctctgaaccccgaggcgcgc
cgccggctggaggcgctggagaccttctccgacctcggcagcggcttcaacctggccatg
caggaccttgacatccggggggccggcaacctcctgggggcggagcagagcggattcatg
gaggacctgggctacgagacctatcagaaaatcctcagccaggcggtgatggaactgaag
aacgacgagttccaggacctttatgcggaggagatgggcgaggggaagcagatcacgggc
gacgacttcatcgacgactgtgccgtggagagcgacctcgagatgtacttccccgacaac
tatgtgccgggcagctcggaacggatgctgctctaccgggaactggacaacatcgagaag
gacagcgacctcgaggcctaccgccgccggctgcaggaccgcttcggccccgtcccgcgg
cagggcgaggagctgatgcaggtcgtggccctgcgccgcgtgggcaagcggctgggctgc
gagaagatcatcctcaagcagggacggatgcagatgcagttcgtgtccaatccccgcagc
atgtactatcagagtgccgccttcggcaaggtgctggactatatcgggcagcatccccgc
cgctgcagcctgaaagagaagaacggcaagcggtcgatggtggtcggcgacgtgaagacc
gtggaagacggcgtgaaggtgttgagggagatcgagagcgggacgcgcaccctgccgtcc
gccgggtag
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