Prunus mume (Japanese apricot): 103318544
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Entry
103318544 CDS
T03196
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103318544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103318544
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103318544
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103318544
Messenger RNA biogenesis [BR:
pmum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
103318544
DNA repair and recombination proteins [BR:
pmum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
103318544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103318544
NCBI-ProteinID:
XP_008218164
UniProt:
A0ABM0N1L2
LinkDB
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Position
LG1:complement(2012739..2022520)
Genome browser
AA seq
918 aa
AA seq
DB search
MIKMQSMQAVLKQYFGFSSFRPYQKDVIEKIIEGNDSLIVMATGSGKSLCYQVPPLVVGK
TGVVVSPLISLMQDQVMSLKQRGIRAEFMGSSQTDSTVQNRAESGQFDILYMTPEKACLI
PASFWSKLLSVGICLFAVDEAHCISEWGHDFRVEYKKLDKLRGILVDVPFIALTATATEK
VRMDIANSLKMQNPYVTIGSFDRPNLFYGVKSFNRGQSFVHELVQEVSKFVRRDGSTIIY
CTTIKDVEQVFKSLKELDIKAGIYHGQMDSKARAESHRLFIRDELDVMVATMAFGMGIDK
PNIRQVIHYGCPKSLESYYQESGRCGRDGVASVCWLYYTRSDFAKSDFYVGELQTESQRR
AVVESLMAAQQYCLLTTCRRKFLLGHFGEKISADKCGICDNCISSKRERDMSREAFLLMA
CIQSCGSKWGLNMPVDILRGSRAKKIIDPQYDKLPLHGLGKDYSSNWWKALGYQLISSGY
LMETVNDIYRTVSVSPKGYQFLSSAGPDHQAPLILPVTSEMVDDEDNKHASGEVGEIKSL
ATVECEGFSEAEKQLYHLLLEERRKLARAIGTAPYAICGDQTIKKIALTRPSTKARLANI
DGVNQHLVVAHGNNFLRIIQDLSQGLNLTLDGEATVQTAVTRKVYPVSNQPKKLTPAKFE
AWKMWHEEGLSIRKIANFPGRPAPIKEQTVHEYLMDAAQEGCEIDWIRLCDEVGLTRKVF
SDIQCAISKVGSSEKLKPIKEELPEDISYGHIKTCLAMQKYGISLEVIPSNLHDAQKAGH
LSNKETELSPCSTRTSPMEGPCEAETLVQNSVATLGENEETASVPFTWGQTVKLPKVHFE
DALSKKRQKLSSPDDGNSIALKATESSLFNWLKNKDGVTLAEILEHFYGSEEQSVIDLLS
CLEGDFLIYRKNNMYMII
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaatgcagtccatgcaagccgttctcaagcaatactttgggttttcttcattt
cggccataccaaaaggacgtgatagagaaaatcatagagggaaacgactcattgattgtc
atggccactggaagcggcaagtccttgtgctaccaagtgcctcctttggttgttggaaag
actggtgtggttgtaagccctcttatatccttaatgcaagatcaggtaatgtctttgaaa
caacgaggaatcagagctgagtttatgggaagtagtcaaacagattccactgtccagaac
agagctgaaagtggtcaatttgatattttgtacatgaccccagaaaaggcatgtttgatt
cctgccagtttctggtcaaaattgcttagtgttggaatctgtttgtttgctgttgatgaa
gcacattgcatatcggagtggggccatgatttcagggtggaatacaagaaattagacaag
ttacgtggcattcttgttgatgttccatttattgccttaactgcgactgctactgaaaag
gttcgaatggacattgctaattccttgaagatgcaaaacccatacgttaccataggctca
tttgatcgtccaaatctgttttatggtgtcaagtcattcaatcgtggtcaatcatttgtt
catgagctagtgcaagaagtttcaaaatttgtacgcagagatggttcaaccatcatttac
tgcacaacaattaaagatgttgagcaggtattcaagtcactcaaggagctagatattaag
gctggaatctatcatggtcaaatggacagtaaggctcgtgcagagtcccatagattattt
ataagagatgaattagatgtcatggttgctacaatggcttttggcatgggtattgataag
ccaaacataaggcaagtgatacattatgggtgcccaaagagtttggagtcctattaccag
gaaagtggacgctgcggcagagatggtgtggcgtctgtttgctggctttattacactaga
agtgactttgcaaaatctgacttttatgttggagagttacaaacagaaagtcaacgtaga
gctgtggttgagtcattgatggcagcacaacagtattgtttactgacaacttgccgaagg
aagttcttgcttggtcactttggggaaaaaatttcagctgataaatgtggtatttgtgat
aactgcatttcctcaaagagggagcgagacatgtctagagaagcatttcttctaatggcc
tgcattcaatcatgtgggagtaaatggggtctcaatatgcctgtagacattcttcgtggc
tctcgagcaaaaaaaattattgatccccaatatgacaagcttccactacatggacttggg
aaggactattcttcaaattggtggaaagcacttggttaccaattaatttcttctggttat
ttgatggaaacagtaaatgacatatacagaactgtaagtgttagtccaaaagggtaccaa
tttcttagttctgctgggcctgatcatcaagcacccctaatcttgccagtgaccagtgaa
atggtcgatgatgaggacaataaacatgcctcaggagaagttggagaaattaaaagtttg
gctactgtggaatgtgaaggattttcagaggctgagaaacaactctaccacctgcttcta
gaagagagaaggaagcttgcaagagccattggaactgcaccatatgctatttgtggtgat
caaacgatcaaaaaaattgctttaacaagaccatctaccaaagcaaggttggcaaacatt
gatggtgtcaatcagcaccttgtagtggcacatggaaacaattttctgcgtatcatccag
gatctatcacaaggactaaatcttacgttggatggagaggcaactgtacaaactgctgtt
acaagaaaagtctatccagtatccaaccaaccaaaaaagttaacgccagcaaagtttgaa
gcttggaagatgtggcatgaagagggtctctcaattcggaaaattgctaacttccctggt
agacctgctcctattaaagagcagactgtccatgaatatctgatggacgctgctcaagaa
ggatgtgaaattgattggatcagattatgcgacgaggttgggctgacgcgtaaagttttc
tcagatattcagtgtgccatttcaaaggttggctctagtgaaaagttgaagcctatcaaa
gaagaattaccagaagatataagttatggacacatcaagacttgcctggcaatgcaaaag
tatggaatatctctggaagtgattccatctaacctccacgacgcacaaaaagctggtcat
ctttcaaacaaggaaacagaattgtcaccatgttctactcgtacatcccccatggaagga
ccgtgtgaagctgaaaccttggtccaaaactcagttgcaaccttgggtgaaaatgaagaa
actgcttccgttccctttacctggggacaaacagtaaagctacccaaagtacattttgag
gatgcactctcaaagaaacgccaaaaactaagtagtccagatgacggaaattctattgca
ttgaaggcaacagagagttccttattcaattggcttaagaacaaagatggggttactctc
gcagagattttggagcacttctatggatctgaagagcaatctgtcattgatctactcagt
tgtcttgaaggtgactttctgatatatagaaagaacaacatgtatatgatcatctaa
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