Prunus mume (Japanese apricot): 103318576
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Entry
103318576 CDS
T03196
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103318576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103318576
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103318576
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
103318576
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103318576
NCBI-ProteinID:
XP_008218202
LinkDB
All DBs
Position
LG1:25297572..25302548
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AA seq
283 aa
AA seq
DB search
MVGLSIGEKHFIQGGIAQDLRSDGRKRLTTRPIYVETGVISQANGSARVRMGATDVIASV
KAELGRPNALQPDKGKVVVNVDCSPTAAPMFEGRGGEELSAELAVALQRCLLGGKSGSGA
GIDLSSLVVVEGKICWDLYINGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAAGASGD
DQPEVDVSDEEFLQFDTSRVPVLVTLTKVGRHYIVGATSEEESQMCLAVSISINRQGHIC
GLTKRGGAGLDPSIILGMISVAITVSEQLINTLDSHIAAAEAG
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccataggagaaaagcattttatacagggtggcattgctcaggatctt
cgatctgatggccgaaaaagattgacaactcggcccatctatgttgaaactggagtcatt
tcccaggcaaatggttcagcaagggtcaggatgggtgccacagatgtcattgccagtgtg
aaggcagaacttggaaggccgaatgcgttgcaacctgacaaaggaaaggtcgttgtgaat
gttgattgcagtcccactgcagcaccaatgtttgagggtagagggggtgaggagctgtca
gcagaactcgcagttgctcttcaacgttgtctcttgggcggtaaaagtggatctggtgct
ggaattgatctctcctctctggtagttgtggaaggaaagatctgttgggatctttacatc
aacggccttgttgttagttcagatgggaatctgctagatgccctaggtgctgctataaag
gctgctttgagcaatacaggcatcccaaaagtaaatgttgcagctggtgcatcaggcgat
gatcaaccagaggttgacgtaagcgatgaggaatttctgcaatttgacacatctagggtc
cctgtcttagttacattaacaaaggtaggcaggcactatattgtaggtgccacttcagaa
gaggaatcacaaatgtgcttggctgtttctatttccatcaataggcaaggccacatttgt
gggttgacaaaacggggaggtgccggcctagatccaagcatcattcttggcatgatatct
gtggcaataacagtaagtgagcagctgataaacacattggattctcatatagctgctgct
gaagctgggtga
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