Prunus mume (Japanese apricot): 103318702
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Entry
103318702 CDS
T03196
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103318702
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmum01009
]
103318702
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103318702
03036 Chromosome and associated proteins [BR:
pmum03036
]
103318702
Protein phosphatases and associated proteins [BR:
pmum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
103318702
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
103318702
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
103318702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
P2R3B_EF-hand
2-oxogl_dehyd_N
DUF4187
wHTH-Calcineurin_assc
Motif
Other DBs
NCBI-GeneID:
103318702
NCBI-ProteinID:
XP_008218333
LinkDB
All DBs
Position
LG1:25782326..25787578
Genome browser
AA seq
539 aa
AA seq
DB search
MSMEIAVDAGSFDAELLQLTEVSPLALKSNPSYVESLFEQWLSLPETNRLVTQLLAEAKA
GGPLTVHGNSSSPHATAGNALPSMFPAGSAPPLSPRSSSGSPRIMKQRTGPSNLGSPLKV
VSEPVKELIPQFYFLNGRPPPNELKEQCLFRINQFFSGNADGLQMQEFKSVAKEVCKLPS
FFSTSLFRKIDVNSTGFVTRDTFTDYWVNGNMLTMDIATQIYSILKQPDLKYLTQDDFKP
VLRELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGNGHLTLRELKRGNLIDAMQ
HADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIF
SQVARKFTSKVEGKMGYQDFVYFILSEEDKSSEPSLEFWFKCVDLDGNGVLTRNELQFFY
EEQLHRMECMAQEPVLFEDILCQIIDMIGPENESYVTLRDLKGCKLSGSVFNILFNLNKF
MAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggaaatcgcggtggatgcggggtcgtttgacgccgagttgttgcaacttacg
gaggtgtcccctttggccctcaaatcgaatccaagctacgtcgagtcgctcttcgagcag
tggctttcgcttcccgaaactaaccgtctggtgacacaattgctcgctgaagcaaaggca
ggtggacccttaactgtccatggcaactcttctagtccgcatgccactgcaggcaatgct
ttgccttccatgtttccagcaggcagtgcaccaccactgtcaccaagaagttcatctggc
tcccctcgcattatgaaacagaggactggcccttctaatttaggttctcccctgaaagta
gttagtgagccagttaaagaattgatacctcagttttactttctaaatggtcgcccacct
ccaaatgaactaaaggagcaatgtttatttagaataaatcagtttttctctggaaacgcg
gacggactgcagatgcaagaatttaaatcagttgctaaggaagtttgcaagctgccttca
ttcttctccacgtctcttttccgaaagattgatgttaatagcactggatttgtaacaagg
gatacatttactgattattgggtcaatggcaacatgttgacgatggatatagctactcaa
atatattcaatcttaaagcaaccagatctcaagtaccttactcaggatgactttaaacct
gtccttcgagaacttttggcaactcatccagggttggagttcttacagagcacacctgag
tttcaagaaagatacgctgaaactgtaatatacagaatattttactacataaatagatct
gggaacggtcatctcaccctcagggagctgaaacgtggaaacttgattgatgcaatgcaa
catgcggatgaagaagaggacatcaataaggttttgaggtacttctcttatgagcatttt
tatgttatatactgcaagttttgggagctggatacggaccatgatttccttatcgacaaa
gagaacctgataagatatggtaaccatgcacttacctaccggattgttgacagaatattt
tctcaggttgcaagaaagtttactagcaaggttgagggaaagatgggatatcaagatttt
gtgtacttcattctgtcagaggaggataaatcgtccgagcctagccttgagttctggttc
aagtgcgtagatttggatggaaatggagttctgacacgtaatgaactgcaattcttttat
gaggagcaattgcatagaatggaatgcatggcccaagagcctgttctctttgaggatata
ttatgccagataattgacatgattggaccagagaatgagagctatgtcacactccgtgac
ctgaaaggctgtaagctttcaggaagtgtcttcaacatccttttcaaccttaacaagttc
atggcctttgaaactcgtgatccgtttcttattcgtcaggaacgcgagaatccaaccttg
acagagtgggaccggtttgcacatagagaatatatcagactttctatggaagaagatgtt
gaagatgcctccaatggaagtgctgaagtttgggacgaatcgcttgaagctcccttttga
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