Prunus mume (Japanese apricot): 103318723
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Entry
103318723 CDS
T03196
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103318723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103318723
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103318723
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
103318723
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Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
CHASE5
Motif
Other DBs
NCBI-GeneID:
103318723
NCBI-ProteinID:
XP_008218364
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All DBs
Position
LG1:25932797..25934956
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AA seq
195 aa
AA seq
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MGEDSEWVSPGEVLGKASKFKAGRGAYVSPDNLTVYASLTGLRRIISPPPDSPDQRPTVE
VTGHKAHGAIPEPGSIVIARVTKVMARMASADIMCLGTKSVREKFTGIIRLQDVRATEID
KVDMHMSFHPGDIVRAVVLSLGDARAYYLSTAKNELGVISAQSAAGATMVPISWTEMQCP
LTGQIEHRKVAKVGG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagatagtgagtgggtgagcccaggggaagtgcttgggaaagcctccaagttt
aaagcaggcagaggtgcctacgtgtcgccggacaatctcaccgtctatgcttccctcact
ggactccgccgcatcatatccccacctcccgactcacccgaccagagacccactgtggaa
gtaactggtcacaaggcccacggtgccattccagagcctggatcaattgtcattgctaga
gttaccaaagttatggcaagaatggcttctgctgatattatgtgtcttggcactaagtct
gtccgagaaaaatttaccggtataatcaggcttcaagatgttcgagcaaccgagatcgat
aaagtggatatgcacatgtcttttcaccctggtgacattgtcagagctgttgtgctgtcc
cttggagacgctagggcttattatctgtcaactgcaaagaacgaattaggtgttatttct
gcccagagtgcagcaggtgcaacaatggtgccaataagctggacagagatgcaatgccct
cttacagggcaaattgagcacagaaaggttgctaaggtcggaggatga
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