KEGG   Prunus mume (Japanese apricot): 103318723
Entry
103318723         CDS       T03196                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103318723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103318723
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103318723
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     103318723
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 ECR1_N_2 CHASE5
Other DBs
NCBI-GeneID: 103318723
NCBI-ProteinID: XP_008218364
LinkDB
Position
LG1:25932797..25934956
AA seq 195 aa
MGEDSEWVSPGEVLGKASKFKAGRGAYVSPDNLTVYASLTGLRRIISPPPDSPDQRPTVE
VTGHKAHGAIPEPGSIVIARVTKVMARMASADIMCLGTKSVREKFTGIIRLQDVRATEID
KVDMHMSFHPGDIVRAVVLSLGDARAYYLSTAKNELGVISAQSAAGATMVPISWTEMQCP
LTGQIEHRKVAKVGG
NT seq 588 nt   +upstreamnt  +downstreamnt
atgggagaagatagtgagtgggtgagcccaggggaagtgcttgggaaagcctccaagttt
aaagcaggcagaggtgcctacgtgtcgccggacaatctcaccgtctatgcttccctcact
ggactccgccgcatcatatccccacctcccgactcacccgaccagagacccactgtggaa
gtaactggtcacaaggcccacggtgccattccagagcctggatcaattgtcattgctaga
gttaccaaagttatggcaagaatggcttctgctgatattatgtgtcttggcactaagtct
gtccgagaaaaatttaccggtataatcaggcttcaagatgttcgagcaaccgagatcgat
aaagtggatatgcacatgtcttttcaccctggtgacattgtcagagctgttgtgctgtcc
cttggagacgctagggcttattatctgtcaactgcaaagaacgaattaggtgttatttct
gcccagagtgcagcaggtgcaacaatggtgccaataagctggacagagatgcaatgccct
cttacagggcaaattgagcacagaaaggttgctaaggtcggaggatga

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