Prunus mume (Japanese apricot): 103318967
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Entry
103318967 CDS
T03196
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03022
Basal transcription factors
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103318967
09124 Replication and repair
03420 Nucleotide excision repair
103318967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103318967
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103318967
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103318967
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103318967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
103318967
NCBI-ProteinID:
XP_008218664
LinkDB
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Position
LG2:complement(704493..711526)
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AA seq
578 aa
AA seq
DB search
MTENKFVFRPNDPSSAAKFDVEFKYITGHKNTKEGTDKPPWLNLSDKDRCYIFEFGTFHD
LHVCRDFVGNALAKSGEAAKASSAAKPTSAAKTTSEKSGVTLPDEQLSTAEMQLRMKLLQ
EDSELQKLHMQFVISGVLTESEFWATRKKLLDGDSRTKSKQRVGFRSSMILDTKPMTDGR
MNKVTFNLTPEIKYQIFALKPAVHQAFLTLVPSKMTEKDFWTKYFRAEYLHSTRNAVAAA
AEAAEDEELAIFLKEDAILASEARRKIRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDV
TELQNELYRRTLSQDLNRQGAVVLQGRTVDVDLEDPRTVAEALMQSRRESDESAEQDRLD
RITRMTEIEDLQEHHDHPVAQLCIKDPRDYFDTQQVNALKTLDDSRTGTEQKKCSLTTEE
AYGSLREAISKIKSIGLKNSTVAPEIAITVLNGLTQNISSTKYQLGKNPQDSVLDSLPNK
TKEELLHHWMSIQELLRHFWSSYPITTTYLSTKVGRLKDAMSQIYRQLEEIKQSDFRHQV
SLLVRPMHQALDAAFQHFDADLQKRAARSGGETPNGNS
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaacaagtttgtgttcaggccaaacgacccctcgtctgctgcgaagttcgat
gtggagtttaaatacattacaggtcacaaaaacactaaggagggaacagataaaccacct
tggcttaatctcagtgacaaggatagatgttacatttttgagtttggaacttttcacgat
cttcatgtatgccgagattttgtaggcaatgcccttgctaagtctggagaggcggcaaaa
gcttcttctgctgcaaaacctacttctgctgcaaaaacgacttctgagaaatctggagtc
acattgcctgatgaacaactcagtactgcagaaatgcagctccggatgaagctattacaa
gaagacagtgaattgcagaaacttcatatgcaatttgtaatcagtggtgtcttgacagaa
tctgagttctgggcaactaggaagaagttgcttgatggagatagccgtacaaagtcaaag
caacgggttggtttcagaagttcaatgatattggacaccaaacctatgactgatggccgg
atgaacaaggttacttttaatttgactccagagattaaatatcagatttttgccctgaaa
ccagctgttcaccaggcatttcttactctggttcccagtaagatgacagaaaaagacttc
tggacaaaatatttccgagcggaatacctccacagtacaaggaatgctgttgcagctgca
gcagaagctgctgaggatgaggaactggcaatttttttgaaggaggatgctatattggca
agtgaagctcgtcggaagattcgacgggttgatccaactttagatatggaagctgaccaa
ggagatgattatacccatcttccagatcatgggatatttcgtgatggaagcaaggacgtc
acggaattgcagaatgagctatacaggaggactttatcacaagaccttaaccgacaaggc
gctgttgttcttcaaggaagaacagttgatgttgatttagaagatccaagaactgttgcg
gaggcacttatgcagtcaagacgggagtctgatgagagtgctgaacaggatagacttgat
aggattactcggatgacggagatagaggaccttcaagaacatcacgatcatcctgttgct
caattatgtattaaggatcctcgagactactttgacacgcaacaagttaatgcacttaaa
actttggatgactcacgtactggaactgaacagaaaaaatgcagcctgactactgaggaa
gcatatggctccttgagggaggctatatctaaaattaagagcattggtttgaaaaattcc
acagttgcaccagaaattgctattacggttcttaatggactgacccagaatatttcaagt
acgaagtatcaacttgggaagaatcctcaggacagtgtcctagacagtttgccaaacaaa
acgaaagaggaacttctgcatcactggatgtccattcaagaattactgaggcacttttgg
tcttcatatccaattacgacaacatatctatctactaaggtaggcagactgaaggatgcc
atgtcacaaatttatcgacagttagaggagataaagcaatcggacttccggcaccaggtt
tccctcctcgttcgtccaatgcatcaggctcttgatgcggcttttcaacattttgatgcg
gacttacagaaaagagcagcaaggagtggaggagagacaccaaatggaaactcgtag
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