Prunus mume (Japanese apricot): 103319100
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Entry
103319100 CDS
T03196
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103319100
09123 Folding, sorting and degradation
03018 RNA degradation
103319100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103319100
03041 Spliceosome [BR:
pmum03041
]
103319100
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103319100
mRNA degradation factors
5'-3' decay
Lsm complex
103319100
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103319100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
103319100
NCBI-ProteinID:
XP_008218820
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Position
LG2:1743179..1746298
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AA seq
98 aa
AA seq
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MSSGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNISIVGELDADLDSTVDWSNMRAYPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtggccctggtcttgagtcacttgttgatcaaacaatttcagttatcacaaat
gatggacggaatattgtgggagtcttgaaaggcttcgaccaggctactaatatcattctc
gatgaatctcatgaacgtgttttctctacaaaggagggtgttcagcaactcgtgttgggg
ttgtatataatcagaggtgacaacataagcatcgttggggaattagatgcagatcttgat
tctactgttgactggtcgaatatgagagcttatcccctcaagcctgtcatccactga
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