Prunus mume (Japanese apricot): 103319104
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Entry
103319104 CDS
T03196
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103319104
03015 mRNA surveillance pathway
103319104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103319104
03041 Spliceosome [BR:
pmum03041
]
103319104
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103319104
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103319104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
103319104
NCBI-ProteinID:
XP_016647920
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All DBs
Position
LG2:complement(1789541..1795930)
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AA seq
419 aa
AA seq
DB search
MGSAAVEKTEEELRKEIDELQRQQREITERLRDPRGLRKGGLAAAGPRNFAANGARPRGF
TRPADRPDEDQPPAKRRLSSAVVKVEDGEITEIAEEAKDGKKNDTNEEAKADQSDRKLSN
SQQSGWSRRDGNHGAAKKDFEIPAPDHVPRVLPKEQDPSLVNRNKRMLGQLLGTLEKFRK
EDMQLSGTEAFMRRSNSLQRAEQRAREESERLRQQEREQIAEKRRRDLTLRARVNAKTEE
KRLELLFLQWSEHNKKLCNFIRTKAEPPIYYLPKKPLDEDPTLAEQRKEKEFLEWKAARR
EELTEYQKQIGEQCIANAEKELERWQNARKPRKANNDVMNLQETMDKELDTHRLEHGPKK
RKIPDGSNNDEDEDDVEDINVAEDYMIDDVLDVDDNSRRIDEIVKPEAGNTSPNADAVE
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcgccgcagttgagaaaacagaggaggagctccgtaaggagatcgatgaactc
caaaggcaacagcgcgagattacggaacggcttcgagaccctaggggacttcgcaaggga
ggcttggcggctgctggtcctcgcaattttgccgccaatggtgctcgtccgcgaggcttt
actcgacccgcagataggcctgatgaggatcaacctcctgcaaaacgccggctttcatca
gctgttgtcaaggtggaggatggagaaatcactgaaattgctgaagaggccaaggatggg
aagaagaatgatacaaatgaggaagctaaagctgatcagagtgataggaagttgtccaat
tcccaacaaagtggctggtcaaggagggatggaaatcacggagcagcaaagaaggatttt
gaaattccagcaccagatcatgttccaagagtattgccgaaagaacaggatcccagcttg
gttaacaggaacaaaagaatgctaggacaacttttggggactctagagaaattcaggaaa
gaggacatgcaactttcaggaacagaggcattcatgcggagatcaaattcattacaaaga
gctgagcaaagggctcgtgaagagagtgaaagacttaggcaacaggagcgtgaacaaatt
gcggaaaagcggaggagagatctgactctgcgggcacgtgttaatgccaagacggaagaa
aagagattggaactgctttttcttcagtggagtgagcataataaaaaactttgcaatttt
ataaggactaaggcagagcctccaatttattatctgcccaagaaaccattggatgaggat
cctacgttagctgagcagcgaaaagaaaaggagtttctggaatggaaagctgcacgaaga
gaggaactgactgagtaccagaagcagattggggagcagtgtattgccaatgctgaaaag
gagttggagaggtggcaaaatgcaaggaaaccaaggaaagcaaacaatgatgtgatgaac
ttacaggaaacaatggacaaagaattggacacacataggcttgagcatggccccaagaaa
agaaagatccctgacggaagcaacaacgatgaagatgaggatgatgtggaagatatcaat
gtagcagaggactacatgattgatgatgtgctagatgttgatgataacagccggaggatt
gatgaaatagttaaaccagaagcaggtaataccagtccaaatgcggatgctgttgagtag
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