Prunus mume (Japanese apricot): 103319449
Help
Entry
103319449 CDS
T03196
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
103319449
Enzymes [BR:
pmum01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
103319449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
103319449
NCBI-ProteinID:
XP_016646943
LinkDB
All DBs
Position
LG2:4257702..4263670
Genome browser
AA seq
609 aa
AA seq
DB search
MMDNGIVQVTLSNPDGIVTGIRFNGIDNLLEIRNEEINRGYWDLVWSSATTGTTGIFDVI
KGTSFRVIMESEEQVELSFTRAWDPSQQGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLRE
WPGFELGETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPSRGQALAFPEAVLLVNPVE
PEFKGEVDDKYQYSCDNKDNKVHGWICTEPPVGFWQITPSNEFRSGGPFKQNLTSHVGPT
TLAMFLSAHYSGEDLVPKFAAGEQWKKVFGPVFMYANSAYEGDDPLSLWEDAKSQMMMEV
QCWPYSFPASEDFPKSHQRGSVSGRLLIRDRYISDDYISAQGAYVGLAPQGDVGSWQREC
KNYQFWTTADENGYFLIDGICTGDYNLNATVPGFIGDYQYDVVLTITSGCEVEMGDLRSA
AEFYVPDPNPKYINKLFVDHPDRFRQYGLWERYSELYPDKDLVYTVGVSDYSKDWFFAQV
NRKKDDNKYQGTTWQIKFNLDTVDQSGPYKLRLAIASATLSELQVRVNDPKAYHPLFSSG
LIGKDNSIARHGIHGLYWLFNVDIPSSRIIEGDNIIYLTQPRSTSPFQGIMYDYIRLEGP
PSLSSKRET
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgatggataatgggattgtccaagtgacattatcaaacccagacggaatagtcactgga
attcgattcaatggcatcgataacttgctggagattcgtaatgaggaaattaacagaggg
tactgggaccttgtttggagttcagccactactggaacaacaggaatatttgatgtgatc
aaaggaacaagttttagggttataatggaaagtgaagaacaagttgagctctctttcaca
agagcctgggatccctcccaacagggcaagctcgtacccttaaatattgataaaaggttc
attatgcttcgaggttcctcaggcttctactcctacgccatttacgagcacttgagggaa
tggcctggtttcgagcttggagaaaccagaattgcgttcaaactcagaaaagacaagttt
cactacatggccatggcagacaataggcaaagaaacatgccattgcctgatgaccgttta
ccgtcgagaggccaagccctagccttcccagaggcagttcttcttgtcaatcctgtggag
ccagagttcaaaggagaagtggatgacaagtaccaatactcatgcgacaacaaggataat
aaagtacatgggtggatatgcactgagccaccagtagggttctggcaaattacaccaagc
aatgagttccgatctggtggaccctttaaacagaaccttacctcccatgttggccccacc
acccttgctatgtttctaagcgctcattattctggagaggatttggtgccaaaatttgca
gcgggtgagcaatggaagaaagtttttgggccagtttttatgtatgctaattctgcatat
gaaggagatgatccgctttcgttatgggaggatgctaaatcacagatgatgatggaagtc
caatgctggccctacagtttcccagcatctgaggattttcccaagtcacaccaacggggt
agtgttagtggtagactacttattcgagacagatatatcagcgatgactacatatcagcc
cagggtgcatatgttgggttagccccgcaaggagacgttggatcgtggcaaagagaatgc
aagaactatcaattctggacgacagcagacgagaatggctactttctcatcgacggcata
tgcactggcgattataatcttaatgcaacggtccctggttttatcggagattatcaatac
gatgtcgttctcactataacctcaggttgtgaggttgagatgggtgatcttcggtctgct
gcagagttttatgttcctgaccctaatccaaagtacattaacaaactctttgtcgaccat
ccagacaggtttaggcagtatggattgtgggaaagatactcagagttatatcctgataaa
gacttggtttacacagttggtgtcagtgactatagcaaagactggttcttcgctcaggtt
aacaggaagaaagatgataataaatatcaaggaactacttggcaaatcaaattcaatctt
gacactgtagaccagagtggtccctataagctgagactagcaattgcatcagcaactctc
tctgaattgcaggttcgggtaaacgatccaaaagcatatcatcctcttttctcaagtggg
ttgataggtaaggacaattcaatagcaaggcatggaattcatgggctatattggcttttc
aatgtcgacatacctagctctcgaattattgagggagataatattatctatttgacacaa
ccaagaagcacaagtccttttcaaggaatcatgtatgattatattcgtttagaaggcccc
ccatcactaagttccaaaagagagacttga
DBGET
integrated database retrieval system
