Prunus mume (Japanese apricot): 103319692
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Entry
103319692 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103319692
09122 Translation
03013 Nucleocytoplasmic transport
103319692
03015 mRNA surveillance pathway
103319692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103319692
03041 Spliceosome [BR:
pmum03041
]
103319692
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103319692
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103319692
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103319692
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103319692
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103319692
NCBI-ProteinID:
XP_008219486
UniProt:
A0ABM0N4M9
LinkDB
All DBs
Position
LG2:complement(6060210..6065705)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYEEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGHNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggatgatgtgtacgaggaggagcttgtcgattatgaagaagaggag
gagaaggcccccgactccgcagctaaagtcaatggcgaagcccctaagaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagccagagcttcttcgagctatt
gtggactccgggtttgagcatccgtctgaagtgcaacatgaatgtattcctcaagctatc
ctgggaatggatgtcatttgtcaagctaaatctgggatggggaaaactgctgtttttgtt
ctatcaactttgcagcagattgaccctgtagcaggccaagtttctgcactcgttctttgc
catactagagaattagcttaccagatctgtcatgaatttgagaggttcagtacatacttg
cctgatctcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaaagatttg
ctgaaaaatgaatgccctcacattgttgttggaacgcctggaagaatattggcattggca
agggataaagacctctccttgaagaatgtgaggcatttcatccttgatgaatgtgacaaa
atgcttgaatcactagacatgaggagagacgtgcaagagattttcaagatgacgccgcat
gataagcaagtgatgatgttttctgcaacactcagcaaagaaatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgacgatgaagccaagttgaccctgcat
ggtctagtacagcactacatcaagttaaccgaggcagagaaaaaccgcaagttgaacgac
ctccttgatgcactggacttcaaccaagttgttatattcgtcaagagcgtgagcagagcc
gctgaattgaacaagttactttcagagtgcaattttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcataacaggatt
cttgtggccacagatttggttggcagaggaatcgacattgagcgtgttaacattgttatc
aactatgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtctggcaattacatttgtttcatctgcagcggactctgatgttctt
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgatact
gccacatacatgccgtcttaa
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