KEGG   Prunus mume (Japanese apricot): 103319786
Entry
103319786         CDS       T03196                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03030  DNA replication
pmum03410  Base excision repair
pmum03420  Nucleotide excision repair
pmum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103319786
   03410 Base excision repair
    103319786
   03420 Nucleotide excision repair
    103319786
   03430 Mismatch repair
    103319786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmum03032]
    103319786
   03036 Chromosome and associated proteins [BR:pmum03036]
    103319786
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103319786
DNA replication proteins [BR:pmum03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103319786
  DNA Replication Termination Factors
   ELG1-RFC complex
    103319786
Chromosome and associated proteins [BR:pmum03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103319786
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103319786
  Check point factors
   HRAD17(Rad24)-RFC complex
    103319786
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 AAA_16 DUF3802 Mg_chelatase AAA_assoc_2 AAA_5 AAA_14 nSTAND3 SLFN-g3_helicase AAA_24 ResIII PhoH AAA_2 AAA_30 AAA_28 Gp44_lid AAA_19 AAA_7 Ribophorin_II AAA_25 NPHP3_N DUF815 RNA_helicase Parvo_NS1 Cdc6_lid IstB_IS21 bpMoxR TIP49 AAA_18 ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 103319786
NCBI-ProteinID: XP_008219600
LinkDB
Position
LG2:6946723..6950608
AA seq 339 aa
MAPLVQSSQPWVEKYRPKQVKDVAQQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMI
SRVLHICQEEGLNLDPEVLSTLSSISQGDLRRAITYLQSAARLFGSSISKKELISVSGVI
PEEVVESFFAACSGDNFDLANKEVNNVIAEGYPVSQMLSQLFEVVVESDDISDEQKARIC
KKMGEADKRLVDGADEYLQLLDVASSVMRAMCNMPEDFS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccactagtgcaaagctctcaaccatgggtcgaaaaatatcggccgaagcaagtg
aaagatgtggctcagcaggacgaggtggttcgggtcctcaccaacaccctcgagacctca
aattgtccgcacatgctcttctacggtccaccgggcaccggaaaaaccaccactgctctc
gccattgcccaccagcttttcggacctgaactctacaagtctagagtgttggagctcaat
gcaagtgatgatcgtgggatcaatgttgtccggacaaagatcaaagattttgctgctgtg
gctgtgggttctgctcaacgtcaagggggttacccttgtccaccatttaagatcattatc
ctagatgaggcggattcaatgacagaagatgctcagaatgctctaagacgtacaatggaa
acctactccaaagtcacaagattcttttttatatgtaattatatcagcaggatcatagag
ccacttgcttcaagatgtgcaaagtttaggtttaagccactttcagaagaaatcatgatc
agccgcgtattgcatatttgccaagaagaaggcctcaacctagatccagaggttctgtca
acactaagttctatctcacaaggtgatcttcgtcgggctattacatacttgcagtcagct
gcgcgcttatttggatcttccatttctaagaaggagctgattagtgtctctggggtaatc
ccggaggaggttgtcgagtcattttttgctgcctgcagcggtgataactttgatttggca
aacaaggaagtcaacaatgtaatcgcagagggatatccagtctctcagatgctttcacag
ttatttgaggtggtggttgaatcagatgacatatcagatgaacagaaggctagaatatgc
aaaaaaatgggtgaagcagataagcgtctcgttgacggtgctgacgagtacttgcagctg
cttgatgttgccagcagtgtaatgcgagctatgtgtaacatgcccgaagatttctcttag

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