Prunus mume (Japanese apricot): 103319786
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Entry
103319786 CDS
T03196
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03030
DNA replication
pmum03410
Base excision repair
pmum03420
Nucleotide excision repair
pmum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103319786
03410 Base excision repair
103319786
03420 Nucleotide excision repair
103319786
03430 Mismatch repair
103319786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmum03032
]
103319786
03036 Chromosome and associated proteins [BR:
pmum03036
]
103319786
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103319786
DNA replication proteins [BR:
pmum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
103319786
DNA Replication Termination Factors
ELG1-RFC complex
103319786
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
103319786
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
103319786
Check point factors
HRAD17(Rad24)-RFC complex
103319786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_11
AAA_16
DUF3802
Mg_chelatase
AAA_assoc_2
AAA_5
AAA_14
nSTAND3
SLFN-g3_helicase
AAA_24
ResIII
PhoH
AAA_2
AAA_30
AAA_28
Gp44_lid
AAA_19
AAA_7
Ribophorin_II
AAA_25
NPHP3_N
DUF815
RNA_helicase
Parvo_NS1
Cdc6_lid
IstB_IS21
bpMoxR
TIP49
AAA_18
ATPase_2
NB-ARC
Motif
Other DBs
NCBI-GeneID:
103319786
NCBI-ProteinID:
XP_008219600
LinkDB
All DBs
Position
LG2:6946723..6950608
Genome browser
AA seq
339 aa
AA seq
DB search
MAPLVQSSQPWVEKYRPKQVKDVAQQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMI
SRVLHICQEEGLNLDPEVLSTLSSISQGDLRRAITYLQSAARLFGSSISKKELISVSGVI
PEEVVESFFAACSGDNFDLANKEVNNVIAEGYPVSQMLSQLFEVVVESDDISDEQKARIC
KKMGEADKRLVDGADEYLQLLDVASSVMRAMCNMPEDFS
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcgccactagtgcaaagctctcaaccatgggtcgaaaaatatcggccgaagcaagtg
aaagatgtggctcagcaggacgaggtggttcgggtcctcaccaacaccctcgagacctca
aattgtccgcacatgctcttctacggtccaccgggcaccggaaaaaccaccactgctctc
gccattgcccaccagcttttcggacctgaactctacaagtctagagtgttggagctcaat
gcaagtgatgatcgtgggatcaatgttgtccggacaaagatcaaagattttgctgctgtg
gctgtgggttctgctcaacgtcaagggggttacccttgtccaccatttaagatcattatc
ctagatgaggcggattcaatgacagaagatgctcagaatgctctaagacgtacaatggaa
acctactccaaagtcacaagattcttttttatatgtaattatatcagcaggatcatagag
ccacttgcttcaagatgtgcaaagtttaggtttaagccactttcagaagaaatcatgatc
agccgcgtattgcatatttgccaagaagaaggcctcaacctagatccagaggttctgtca
acactaagttctatctcacaaggtgatcttcgtcgggctattacatacttgcagtcagct
gcgcgcttatttggatcttccatttctaagaaggagctgattagtgtctctggggtaatc
ccggaggaggttgtcgagtcattttttgctgcctgcagcggtgataactttgatttggca
aacaaggaagtcaacaatgtaatcgcagagggatatccagtctctcagatgctttcacag
ttatttgaggtggtggttgaatcagatgacatatcagatgaacagaaggctagaatatgc
aaaaaaatgggtgaagcagataagcgtctcgttgacggtgctgacgagtacttgcagctg
cttgatgttgccagcagtgtaatgcgagctatgtgtaacatgcccgaagatttctcttag
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