Prunus mume (Japanese apricot): 103319842
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Entry
103319842 CDS
T03196
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03022
Basal transcription factors
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103319842
09124 Replication and repair
03420 Nucleotide excision repair
103319842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103319842
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103319842
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103319842
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103319842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
103319842
NCBI-ProteinID:
XP_008219657
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All DBs
Position
LG2:7350002..7355204
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AA seq
296 aa
AA seq
DB search
MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI
ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSL
LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSC
YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA
SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDVNSTSNKKRKTPET
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgctccttcaaagctctatgctgatgatgttagccttctgatggttttgctc
gacacgaaccctttcttctggagctcatcttccctcccattctccgtgtttctctcccat
gtgcttacatttttgaactcgattttactactcaatcaactcaaccaagttgtggttatt
gctacgggatacaattcctgcagttacatctacgattcttctacctccacgaaccagggt
tctgataatggaagaatgcctgcgcggtgtgttaacttgttgcagaagctggaggaattt
gtgatcaaagacgagcaattgatcaaagaaggcttgagagaagggattgcttcttcgctg
ctatctgggtccttatcaatggctctttgttatatacagagagtttttcgatctggaccg
cttcatcctcaaccccggattttatgcttgcagggatcatcggatggacctgaacaatat
gttgcaatcatgaatgccatattttctgcacaacggtctatggttcctatagattcttgc
tatatgggctctagcaactctgccttcctacagcaggcttcatacattactggtggtgtg
tatctgaagccccaacaaccgaatgggttgttccaatatctctcgacagtttttgcaact
gatttgcattctcgagcctttttacagcttcctaagtctcttggtgtggattttcgtgcc
tcgtgtttttgccataagaagacgatagacatgggctacatttgttccgtgtgcttgtcc
atattttgtaagcatcacaagaaatgttcaacttgtgggtcagtatttggtcaagcccag
tcagatgttaactcaacatccaacaagaaaagaaaaactccagagacataa
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