Prunus mume (Japanese apricot): 103320085
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Entry
103320085 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103320085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103320085
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103320085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
Zn_ribbon_RanBP
MMR_HSR1
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
103320085
NCBI-ProteinID:
XP_008219924
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Position
LG2:8797885..8804429
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AA seq
770 aa
AA seq
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MPHKVNYGVDYDDDYDVYDDYDYDDDDDSAIKNNGKALESKRETERPEVWRCSICTYDNE
GSMSACDICGVLRNPVVKSNSDKKTVEGRCKDSGASIMAKSLFASLPHQIPKQAVLFHQQ
KDDFVIEEGNNFHKLGDFQGPIHEFYNAFNIHNNHHINIAPFKFDVPSPDDLVSNGLWSS
RTGSKASVSDLKSSKVSSKVAKKSGAVSVQSSAEWSDSSSAIGQRSKQDRFDEGNQLENR
TVSYHDGSSDIITLQANGRLSESSSASQPRSRHDTVDESTNSSVIRGKQQSVTSGLKNLD
LDARPGSSNNVNVRGSHSQADYKPEKWMLPDQAVDTLTQLNLAIVGHVDSGKSTLSGRLL
HLLGRISKKEMHKYEKEAKLQGKGSFAYAWALXXXXXXXXXXRGITMTVAVAYFDSRKYH
VVVLDSPGHKDFVPNMISGATQADAAILLIDASVGAFEAGVDGSKGQTKEHAQLIRSFGV
DQIIVAVNKMDIVEYSKDRFDFIKQRLGTFLRSCGFKDSLVSWIPLSAMENQNLVEAPSD
ARFSSWYRGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSSSQGQVSACGKLEAGALRSG
FKVLVMPSGELGTVRSLERDSQACVIARAGDNVAVTLQGIDGGHVMAGGVLCHPGFPVAV
AKHLELKVLVLDVTTPILIGSQLEFHIHHAKEAARVVKISSLLDPKTGKVARKAPRCLTA
KQNAIVEVVLQQPVCVEEFSNSRALGRAFLRALGSTIAVGIVTRIIEEQK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgcctcataaagtaaactatggagttgattatgatgatgactacgatgtctatgacgat
tatgattatgatgatgatgatgattccgccataaaaaataatggcaaagcacttgagtcg
aagcgggaaactgaaaggcctgaggtctggcgttgttccatttgcacgtacgacaatgag
gggagcatgtctgcatgcgacatttgtggggttcttcgaaaccctgtggtgaaaagcaat
agtgataagaaaacagttgaaggcagatgcaaagattctggagcatccataatggccaag
tctctttttgcatcattgccgcaccagatacccaaacaggctgtactatttcatcagcag
aaagatgattttgtgatagaagagggcaataatttccacaagcttggggatttccaagga
cctattcatgaattctataatgcttttaacattcataacaatcaccatattaatatagct
cctttcaagtttgatgtgccatccccagatgatttggtttctaatggattgtggtcctct
agaacgggttcaaaagccagtgttagtgacttgaaatcttcaaaagtttcctcgaaggtt
gctaagaagagtggtgcagttagtgtacaatcaagtgctgaatggtcagatagctcctct
gcaatagggcaaagaagtaaacaagatagatttgatgagggaaaccagttggagaatcgg
acagtcagctatcacgatggaagtagtgacataattactttacaagcaaatggtagattg
tctgaaagttcgtcggcatcgcagccaagaagcagacatgacactgtggatgagagcaca
aattcttctgtgattaggggcaagcagcagagtgttaccagtggcttgaaaaatttggat
ttggatgctagacctggatcttctaataatgttaatgttagaggatctcattcacaagcg
gactacaaacctgaaaagtggatgctccctgaccaagctgtagatacactgactcaacta
aatcttgcaatagttggccatgttgattctggaaaatcaacactctcaggtagactgctt
catcttttgggaaggatatctaaaaaagaaatgcacaaatatgagaaagaggcaaagtta
cagggtaaggggtctttcgcatatgcttgggcattgnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnagaggaataactatgacagtggccgttgcatattttgattccagaaaatatcat
gttgttgtgcttgactcccctggccataaagattttgttccaaacatgatatctggggca
acacaagctgatgctgcgatacttctcatagatgcttcagttggcgcattcgaagctggt
gtggatggtagcaagggacagacaaaggagcatgcacaacttatcagaagctttggtgtt
gatcaaattatagttgccgtgaacaagatggatattgttgagtactccaaggatcggttt
gattttattaaacagagacttggaacatttctccgttcctgtggcttcaaagattctttg
gtgtcttggattccactgagtgccatggaaaatcagaatttggtagaagctccttctgat
gcccgtttttcttcttggtaccgtggaccttacctgttggatgcaattgattccctccaa
cctcccacaagagagttttcaaagccactgctcatgcctatatgtgatgtcattaaatct
tcttcacaaggacaggtatctgcttgtggtaaattggaagctggagctctccgaagtgga
ttcaaggttctggttatgccttcgggagaattagggaccgtacgctctttagaacgtgac
tctcaggcttgtgtaattgcgagagctggtgacaatgtggctgttactctgcaaggcata
gatggaggtcatgtgatggcaggaggtgtgctctgtcaccctggtttcccagttgcagtt
gcaaaacatttggaattgaaggtgctggttttggatgttacaaccccaattttaattggc
tctcagttggaatttcacatacaccatgcaaaggaggctgccagagttgtaaaaatatcg
tcattacttgatcccaagactggcaaagtggcaagaaaggctcctcgctgtcttactgca
aagcagaacgccattgtagaggttgttttgcagcagccagtttgtgtggaagagttctct
aattctagagcccttgggagggcttttttaagggcattaggaagcactattgccgttggc
attgtaacccggattatagaggagcagaaatag
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