Prunus mume (Japanese apricot): 103320210
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Entry
103320210 CDS
T03196
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103320210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103320210
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103320210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103320210
NCBI-ProteinID:
XP_008220073
UniProt:
A0ABM0N626
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All DBs
Position
LG2:complement(9465066..9468229)
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AA seq
243 aa
AA seq
DB search
MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA
CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI
NAACAALVDAGIPLKHLAVAICCCLAESGYVILDPSKLEEQKMKAFAYLVFPNSVLSILP
EEQLQVGGEPMEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPIDSS
KAG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggagatagatagactcgatggtcgtacaccgaaccagttgaggccattggcttgttct
cgcaacgtcctcaaccgtgctcatggctccgccagctggtgtcaaggagataccaaagtt
cttgttgcggtttatggacctaaagcaggaacaaagaagaatgaaaaccctgaaaaagct
tgcattgagattatttggaagccaaaaacaggccaaagtggaaaactggaaagggaatat
gagatgatactaaagaggacattgcaaagcatctgcatactgactctcaatccaaatacc
acaacctcagttattattcaggttgtcaatgatgatggtgctcttctgccatgtgccata
aatgccgcatgtgctgcccttgttgatgccgggattcctctaaagcatcttgctgttgcc
atttgttgttgcctcgcagagagtggatacgtcattttggaccctagcaagctggaagag
cagaaaatgaaggcgtttgcatatttggtctttccaaactcagttctttcaatccttcca
gaagaacaattacaggttggaggtgaacccatggagcatgggatcatcacctctgttacc
cagggtgcaatgtcagtggacgactatcttcactgtttagaacgagggcgtgctgccact
gcaaagatgtctgcttttctcaggaagagcttgcaaccacagcttccgatcgattcgtct
aaagccgggtga
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