Prunus mume (Japanese apricot): 103320269
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Entry
103320269 CDS
T03196
Name
(RefSeq) RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103320269
Transcription machinery [BR:
pmum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
103320269
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
DUF4376
Motif
Other DBs
NCBI-GeneID:
103320269
NCBI-ProteinID:
XP_008220144
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Position
LG2:complement(9795352..9798825)
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AA seq
553 aa
AA seq
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MGLGFRLNLKCGFPVHSSYWQTTSPSKLSSTSVRGREGSFNSARLSFLSVISEEGEASSK
DPLKVYTCPSASPQILEDGVSEMEEAAFRRVPKSISDNRMPVAEGKFISSKGLEACTASH
FSLLLQNLNVLEETFATSNVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIP
TVPVEEGKMERKEDNNVFEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGLKNPT
LSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVVTLRCWAEAAGV
HERVLLQHLRFGWYCQDELMRSTRSLVLYLARNYRGLGVALDDLIQAGNLGLLQGAERFD
HSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDD
EEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHM
KKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLKV
EESHKYLSHYLNN
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggttttaggctgaacctcaagtgtggctttcctgttcattcttcttactgg
caaaccacttccccttcgaagctttcttcaacttctgttagaggcagggagggctctttc
aactcagcaaggttgtcctttctgtctgttatttctgaggaaggtgaggcttctagtaaa
gatcctctgaaagtgtacacttgtccatctgcttccccacaaatcttagaggatggtgtc
tcagaaatggaagaggcagcctttaggagggtgccaaagagtattagtgacaaccggatg
cctgttgcagaaggcaagtttatatccagtaaaggcttagaagcatgcacggcatctcat
tttagtttgttactgcaaaaccttaatgttttggaggagacttttgctacttcaaatgtg
ttaaagttggagaaagagattcttttgcaactagcaaggcttggggctctaaagttattc
gatatctgtctatcaagaactcttaaaacctcaagctttttggatttgtctgacatacct
acagtaccggttgaagagggtaagatggagagaaaagaagataacaacgtattcgagatt
attgttcgttctgggaaaaaggaagaaagaagatcaagaaaaagaacatcagataatgcc
atagtgtcttctaattcattgcctccaaaaacaatttggaaaggtcttaaaaatcctact
ctttcatcaggaaaaagagcatcaaattatagaagtagaagactgaccatttctaaaaat
gaggcagaaatgtcaatcggggttaaggtgatcgccgacttggagagaattaaagaaact
ttggaaaaggaaactggtaaagtagtgaccttaaggtgctgggcagaagcagctggagtt
catgaaagggtgctgctacagcatttgcgttttggttggtattgccaggatgagcttatg
aggagcactcgttccttagttctataccttgctagaaactatagagggctaggggtagcc
ttggatgatttaattcaggctggaaacctgggtctcctgcaaggtgcagaaaggtttgat
cactcaaggggttatagattctcaacctatgttcaatactggataaggaaatcaatgtca
agattggtggcacagcatgctaggggggtccaaattcctttcacactaagcaaggcaata
aatcagatacagaaagctcgaaaagccaattacaacagccacatgaaatacccagatgat
gaggaaattgcaaagattacaggtctttctttggcgagaatcagatcagctagtacatgt
ctgagagttgtgggttcggtagatcataaaatgtgggaaagctctgatgggacatatatg
gaatttacaccagacacatcactaaagagccctgaagaaactgtcatgaggcaacacatg
aaaaaggacattcatgatctgctgaaagggttgaatttgagagagaggcaagtgttggta
ctgcgatacgggctaaacaactacgaccccaagtcacttgaggagattggcagacttttc
catgtgagcaaggagtggataaggaagatagaaaagaaagctctgatgaagctgaaggtt
gaagaatcccacaaatacctaagccattacttgaataactag
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