Prunus mume (Japanese apricot): 103321132
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Entry
103321132 CDS
T03196
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103321132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103321132
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103321132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_15
TPR_19
TPR_2
TPR_16
TPR_9
ANAPC16
Motif
Other DBs
NCBI-GeneID:
103321132
NCBI-ProteinID:
XP_008221123
UniProt:
A0ABM0N8N2
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Position
LG2:complement(14710703..14732398)
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AA seq
763 aa
AA seq
DB search
MEAEFRRVGDQDCKLVDDKYNVEATESLANEALHLPISEAAPIYEQLLTVFPTAAKYWKQ
YVEAQMVVNNDEATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEETRKAFDFM
LSYVGADIASGPVWMEYITFLKSLPALSTQEESQRMIAVRKVYQKAIVTPTHHIEQLWKE
YENFENSVSRQLAKGLLSEYQPKFNSARAVYRERKKYVDGIDWNMLAVPPTGSYKEELQW
MAWKKLLAFEKGNPQRIDNGSSNKRIIFTYEQCLMYLYHYPDLWYDYAMWHAKSGSIDAA
IKVFQRSLKALPDSEMLRYAYGELEESRGAIQPTKKIYESLLGDGVNTTALAHIQFIRFL
RRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKRFMHEPV
YILEYADFLTRLNDDRNIRALFERALSSLPSEESVEVWKRFTSFEQTYGDLASMLKVERR
KKEALSGTGEEGPSSLESSLQDVASRYSFMDLWPCSSKELDHLARQEWLAKNINKKVEKS
TMLNGLGFVDEGSTGLTSNLAVSSKVVYPDTNQMVIYDPRQKPGAGNFQTTTAAGVPTAS
KSLSNPVIAAVGGQTMSAFDEILEATPPALVAFLSNLPVVEGPIPDVDVVLSICLQSDVP
APQPGKSGAAPMPLPSIPAPSTSDLSVSSKSHPIPSASSFKPAKGKRKHFDRQEEEEASV
QSHPLPRDAFRIRQIQKARGTASQTGSASYGSAISGDLSGSTG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgagttcagacgagttggagatcaagattgcaaactcgtggatgataaatac
aatgttgaagccaccgaaagtctagccaatgaggcactacatttgcctatttcagaggca
gcaccaatatatgagcaacttttgacggtgtttcccactgcagcaaaatattggaagcag
tatgtggaggcgcagatggttgtaaataatgatgaggccacgaaacagatatttagccgg
tgtttgttgaattgtttgcaaattcctctttggcgatgctacattcgtttcatcagaaag
gtgaatgacaagaagggtgtagagggtcaggaagagactagaaaagcttttgattttatg
cttagttatgttggagcagatatagcatctgggcctgtgtggatggagtacatcactttt
ttaaagtctttgccggctttaagcacacaggaagagtcacaacgcatgattgctgtgcgg
aaagtataccagaaagccattgttactcctacccatcacattgaacaactttggaaggaa
tatgaaaattttgaaaattctgtcagccgtcaactggcaaaaggactgttatctgaatat
caacccaaatttaacagtgccagggccgtctacagggagcggaagaagtacgttgatgga
attgactggaatatgcttgctgtaccaccaactggctcttacaaggaagaattgcagtgg
atggcatggaagaagttgttagcttttgaaaaaggaaatccacaaaggatagacaatgga
tcatccaacaagcgaattattttcacttatgagcagtgtctaatgtatctataccattat
cctgatttgtggtatgactatgccatgtggcatgcaaaaagtggttcaatagatgccgca
attaaagtttttcagagatctttgaaggctcttcctgactcagagatgcttcggtatgct
tatggagagctggaagaatcccgtggagcaattcagcctacaaagaaaatatatgaaagc
cttttgggagatggtgttaacacgacagcacttgctcatatacagttcattcgtttctta
aggagaactgaaggagttgaagcagctcgcaagtactttttagatgctcgcaaatctcca
aactgcacgtaccatgtttatgttgcttatgcgatgatggctttctgtcttgacaaggat
ccaaagatggcacacaatgtttttgaagctgggttgaaacggtttatgcatgagcctgtg
tacattcttgagtatgcagattttttaactcgtttaaatgatgatagaaatattcgagcg
ttatttgagagggcattaagctcactaccatcagaggaatctgttgaggtatggaagcga
ttcaccagttttgagcaaacttatggagatttagctagcatgttgaaggttgagcgaaga
aaaaaagaagcactttctggaacaggtgaagagggcccttcatcattggaaagttcattg
caagatgttgcatcacgatacagtttcatggatctttggccctgctcttcaaaggaattg
gatcatttagcccgacaagagtggcttgctaaaaatatcaataagaaagtggaaaagtca
actatgctgaatggacttgggtttgtagatgagggttctacaggcctgacaagcaattta
gcagtgtcttcaaaagtagtttatccagatactaaccaaatggttatctatgatccacgg
caaaaacctggtgctgggaattttcagaccacaacagcagctggagttcccactgcttct
aaatccttgtcaaatcctgtgattgcagcagtaggtggtcaaacaatgagtgcgtttgat
gaaatattagaagcaacaccgcctgctttggtagccttcttatcaaatttgccagttgtt
gagggtccaataccagatgttgatgttgtgttgtcaatttgtttgcaaagtgatgtacca
gcaccacagcctgggaagtcaggggctgccccaatgccattgccatctatacctgctcct
tccactagtgacctttctgtttcaagcaagtctcatccaatcccaagtgcgtcatctttc
aagccagccaaggggaaaaggaaacattttgataggcaagaggaggaggaagcttcggtc
cagagccacccactcccaagagatgccttcaggatacggcagatccagaaggctcgcggt
actgcatctcaaactggatcagcttcatatggaagtgcaatttctggagatctatctggc
agcactggctaa
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