Prunus mume (Japanese apricot): 103321226
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Entry
103321226 CDS
T03196
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103321226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103321226
Membrane trafficking [BR:
pmum04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
103321226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
103321226
NCBI-ProteinID:
XP_008221236
LinkDB
All DBs
Position
LG2:15277059..15284691
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AA seq
790 aa
AA seq
DB search
MILDGIGDEEKWLAEGIAGIQHHAFYMHRALDANNLRDALKYSALMLSELRTSRLSPHKY
YDLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRAIQHPMRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVDFVL
QNFTEMNKLWVRMLYQGPGRVREKHEKERSELRDLVGKNLHVLSQIEGVELELYKDTVLP
RVLEQVINCKDELAQYYLMDCIIQVFPDEYHLQTLETLLAAFPQLQPTVDIKTVLSQLME
RLSNYAASSTDVLPEFLQVEAFSKLSSAIGRVIEAQIDMPIVGSISLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSGTTKLEDNRAIKQVVALLSAPLEKYDDIVTALTLSNYPRVMD
HLDNGTNKVMAVVIIQSIMKNSSCISTADKVEVLFELIKGLIKDLDCTSADELDEEDFGE
EQNSVARLIHMLYNDDPEEMLKILCTVKKHIMSGGPKRLPFTVPPLILSALKLVRRLQGQ
DGEVVGEEMPATPKKIFQILNQTIEALSSVPSPELALRLYLECAEAANDCDLEPVAYEFF
TQAFVLYEEEVADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDGVKDGERVLLCLKRALRIANAAQQMASVTRGSSGPVTLFVEILN
KYLYFFEKGNPQITSAAIQGLVELIKTEMQSDSTNVSPAPDAFFSSTLRYIQFQKQKGGV
MGEKYAPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatattggacgggatcggagacgaagagaaatggctggcagaaggaatcgccggcatt
caacaccatgccttttacatgcatcgtgctctggacgcgaacaatctcagagacgctctc
aaatactcggccctgatgctgtctgagcttcgaacctcgaggctttcgcctcacaaatac
tacgatctctatatgcgagccttcgatgaattgaggaagctggagatgttcttcaaggac
gagagcagacatggtgtttcgattgttgatctctacgaacttgttcagcatgctggcaac
atcttaccgagattgtatctcctatgtacggtaggttctgtgtacattaaatctaaggaa
gcacctgccaaggatgtgcttaaagatcttgtggaaatgtgtcgtgccattcaacatcca
atgcgtgggctctttctaagaagctatctttctcaagtcagtagagataagttacctgat
attggttctgagtatgaaggagatgctgacactgtcatggatgctgtagattttgtgcta
caaaatttcacagagatgaataaactttgggttcgaatgctttatcagggacctggtcgg
gtgagagagaagcatgaaaaggaaagaagtgaacttcgtgatcttgttgggaaaaatcta
catgttctcagtcagatagagggcgtggaacttgaattgtacaaagacactgttcttccc
agagtattagaacaggttataaactgtaaagatgagctggcccaatattatttgatggat
tgcataatccaggtctttccagatgagtaccacttgcagacactggagacattattggct
gcattcccccagcttcagccaacagttgatatcaagactgtgttatctcaattaatggag
aggttatcaaattatgctgcgtcaagcacagatgtattacctgaatttcttcaagtggaa
gccttctctaaattaagcagtgctattgggagggtgatagaagcgcagattgacatgcct
attgttggatccatatctctttatgtctctcttcttacatttacactccgtgttcatcct
gatcgccttgattatgtggatcaagtactgggagcatgtgttaagaagctatctggaaca
accaagcttgaagacaatagagccataaaacaagttgttgcgctgttaagtgctcccttg
gaaaaatacgatgacattgttacagccctcacactttctaattatcctcgagttatggat
catcttgataatggaacaaataaagtcatggcagtggtcattattcaaagcattatgaaa
aacagttcttgtatctccactgctgataaggtggaggtgttgtttgaattaattaaagga
ctcatcaaggatttggattgtacttctgcagatgagcttgatgaggaggattttggagag
gaacaaaattctgttgctcgccttatacacatgctttataatgatgatccagaggaaatg
ttaaagatcttatgtacggtcaagaagcacataatgagtggaggaccaaagcgcctacct
tttactgttcctcctcttatattatctgcactcaagttggttaggcggctgcaaggtcag
gatggagaggtagtcggagaagagatgcctgccacaccgaagaaaatttttcagatttta
aatcagactattgaagctctttcctcagttccatctcctgaactggcgttaaggttgtac
ttggaatgtgctgaggctgctaatgactgtgatcttgaacctgttgcttatgaattcttc
actcaggcatttgtattatatgaagaagaagttgcggattccaaagcccaggtgactgca
atacatctcattattgggactctccaaaggatgaatgtatttggcgttgagaacagggat
actttaacacacaaggccacagggtattcagcaaagcttttgaagaaacctgatcagtgc
cgagcggtgtacgcatgttcacatcttttttgggttgatgatcaggatggtgttaaagat
ggagaaagggtcttgctttgtttaaagcgtgccttgagaattgcaaatgctgctcaacag
atggccagcgtaactcggggtagcagtgggccagtcacgctctttgttgagatactgaac
aagtacctctacttctttgagaaaggaaacccccagattacaagtgctgcaatccaggga
ttggtggagttaattaaaactgagatgcaaagcgactctacaaatgtgagtccagcccca
gatgcatttttcagcagcacattgcggtacatacagttccagaaacagaaaggtggggta
atgggcgagaaatatgcccctatcaaggtctga
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