Prunus mume (Japanese apricot): 103321457
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Entry
103321457 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103321457
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103321457
Spliceosome [BR:
pmum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103321457
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Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
103321457
NCBI-ProteinID:
XP_008221485
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All DBs
Position
LG2:16370298..16375232
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AA seq
1180 aa
AA seq
DB search
MDTLSILTPPHTFTRLLSLKRSSYPLLHHLTQTTHALGFCSPKSPPTYSPSSLRFRVTFQ
SPSSAFPAKSQLSDADEEEDEDEDEYEEEDDDEDVAADEYDDVPGDIMSDGLEQSDDEIV
TSVAAAEPSTRPEEFKWQRVEKLCSEVKVFGEEMIDDEELASIYDFRIDKFQRLAIQAFL
RGSSVVVSAPTSSGKTLIAEAASVATVARGRRLFYTTPLKALSNQKFREFRETFGDDNVG
LLTGDSAVNKDAQVLIMTTEILRNMLYQSVGMASSGDGLFHVDVIVLDEVHYLSDMYRGT
VWEEIVIYCPKKVQLICLSATVANPDELAGWIGQIHGKTELVTSSRRPVPLTWHFSTKTS
LLPLLDKTGKHMNRRLSVNYLQLNASGTKSYKDDGSRRRSSRRRASEMSYDDSTGNMSRR
PLSKNDINLIHRSQVPQITDTLWHLKSRDMLPAIWFIFSRKGCDAAVQYVQDNNLLDDCE
MSEVQLALKRFRIKYPDAIRETAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFA
TETLAAGINMPARTAIIASLSKRSDGGRTQLSPNELFQMAGRAGRRGIDERGHVVLVQSP
YEGAEACCKIVFAGLEPLVSQFTASYGMVLNLLAGAKVTHRSNESDDTEASQSGRTLEEA
RKLVEQSFGNYVGSNVMLAAKEELTRIQKEIEILTLEISDDAIDRKSRKLLSGPAYKEIA
DLQEELRAEKRLRTELRRRMESQKLSSLRPMLEEFENGHLPFLCLQYKDSEGVQHSIPAV
YLGKVDSFSSSKLKHMVSADDAFALNAVTSEFESNLVFEPSYYVALGSDNSWYLFTEKWI
KTVYKTGFPNVALALGDALPREIMSMLLDKTELKWEKLGESELGGFWNMEGSLETWSWSL
NVPVLNSLSEHDELLHKSEAYHNAVERYKDQRNKVSRLKKKISRTQGFREYKKIVDMAKF
TEEKIKRLKGRSRRLTNRIEQIEPSGWKEFLQISNVIHETRALDINTHVMFPLGVTAAAI
RGENELWLAMVLRNKILIDLKPPELAAVCASLVSEGIKVRPWKNNSYIYEPSSTVVDVVN
FLDEQRSSFLQLQEKHGVNKPCYLDTQFSGMVEAWVSGLTWREIMMDCAMDEGDLARLLR
RTIDLLVQIPKLPDIDPLLQSNAKTASNIMDRPPISELAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggacactctctctatcctcacacctcctcacaccttcacgcgcctcctttctctcaaa
cgctcttcttatcccctgcttcaccatctcacccaaaccacccatgccctagggttttgt
tcccccaaatcccctcctacatattctccaagctcactgcgttttcgagtcactttccaa
tccccaagctcagccttccctgcaaaatctcaactctccgatgccgacgaagaagaagac
gaagacgaagacgagtacgaagaggaggacgacgacgaagacgtggctgcggatgagtac
gacgacgttcccggcgatattatgtcggacggactcgaacagagcgacgatgaaatcgtt
acttcagtggcggccgcagagccgtcgactcggcccgaggagttcaagtggcagagagtg
gagaagctgtgcagcgaagtcaaagtgtttggcgaggaaatgatagatgacgaagagctc
gcttctatctacgatttccgaatcgataaatttcagagattagcgatacaagcattcttg
agaggttcgtccgtggtggtatcggcacccacgagcagtggaaagactctgatagcagaa
gctgcttccgttgcaaccgtagccagaggaaggagattgttttacacaaccccgctgaag
gccttgtccaatcagaagtttcgagaatttcgtgagacttttggcgacgacaatgtcggc
cttcttactggagattcggcagtgaacaaagatgctcaggttttaattatgaccacagag
atcttgcgcaacatgttgtatcagagcgtgggaatggcttcttctggggatggacttttt
catgtggatgttattgtcctggatgaagttcattatctaagtgacatgtaccggggtact
gtgtgggaagaaatcgttatttattgccccaaaaaagttcaactcatatgtttgtcagca
acagttgcaaatccagatgaattggctggttggattggtcagattcatggtaaaactgaa
ttggtaacttcatcaaggcgtccagtaccattgacttggcatttctcaacgaagacttct
ttgttaccacttcttgataagacaggaaagcacatgaataggaggttgtcagtcaattat
cttcaacttaatgcttcaggaacaaaatcttacaaagatgatgggtctagaaggaggagt
tcaagaagacgtgcaagtgagatgagctatgatgacagtactggtaacatgtctagacga
ccactttcaaagaatgacatcaacttaatacaccgttcacaagtacctcaaattacggat
acattatggcaccttaagtctcgagatatgctgccagctatatggtttatttttagcagg
aaaggatgtgatgccgctgttcagtatgttcaagataacaatctcttggatgactgtgag
atgagtgaggttcaactagccttgaagaggttccgcattaagtatcctgatgctatcagg
gagactgctgtgaagggtttactgcaaggggttgctgcacatcatgctggctgtctacct
ttatggaaatcattcatagaagagctgtttcagcgaggactggttaaggttgtctttgct
acagaaacacttgctgcaggaatcaacatgcctgctaggacagccattattgcatccctc
agcaaaagaagcgacggtggacgtacccaattaagcccaaatgagctgtttcaaatggct
gggcgtgctgggcgtagagggattgatgaaaggggtcatgtagtgcttgttcaaagtcct
tatgaaggtgctgaagcctgttgcaagattgtttttgctggacttgaacctttggtgtcc
cagtttacagcttcatatggaatggtgctaaatcttcttgctggtgcaaaagttacccat
agatcaaatgaatcagatgacacggaagcttcccaatcagggcgaactttggaagaagct
agaaagttagtcgagcaaagttttggaaactatgttggcagcaatgttatgcttgctgca
aaagaagagcttactagaattcagaaagaaattgagatactgactttggaaattagcgat
gatgccatcgatagaaagagcaggaagcttctatctggaccagcatataaggagattgca
gatctacaggaagaattaagagcagagaaacgcctaagaactgaacttagaagaagaatg
gaatctcagaaactatcttcactgagacccatgttagaggagtttgaaaatggacacttg
ccctttttgtgcctgcagtacaaggattctgaaggagttcaacactctatcccggctgtt
tatctggggaaggttgactcattcagtagttcaaagcttaagcacatggtttctgctgat
gatgcttttgcactaaacgcagtaacctcagagtttgaatcaaatttagtttttgaacca
tcatattatgtggctcttggttcagataattcttggtatctatttacagaaaagtggatt
aaaacagtttataagacgggcttcccaaatgttgctttagctctaggagatgctttgcct
cgggaaattatgagtatgcttctggataagacggaactgaagtgggagaagcttggtgag
tctgaacttggtggtttttggaacatggaaggatctctcgagacatggtcttggagtttg
aatgttcctgtcttgaatagtctctctgagcatgatgagcttttgcataagtcagaagca
taccataatgctgttgagcgttacaaagatcaaagaaataaagtttcacgtctgaagaaa
aagatatcacgtacacaaggcttcagagaatacaagaaaatcgttgacatggccaagttt
acagaggaaaagattaaacgcttgaagggtagatcaagacgtttgactaatcgaattgaa
caaattgaaccctctggttggaaggaattcttgcagatcagcaacgtcatacacgagact
cgggcattggatattaatactcatgtcatgtttccacttggtgtaaccgcagctgctatt
cgaggagaaaatgaactctggcttgccatggttcttcgaaataaaatcttaatagatttg
aagcctccggaacttgctgctgtctgtgcaagtttagtatctgaagggatcaaagttcgt
ccttggaaaaacaacagctacatatatgaaccttctagtacagtagttgacgtggtcaac
ttcttggatgagcagagaagctcttttttacagcttcaagagaagcatggtgtgaacaag
ccttgctatttggacacccagttttcaggtatggttgaagcctgggtttctgggttgacc
tggagggaaatcatgatggactgcgcgatggatgagggtgacttagcgcggctcctacga
cgaacaatcgatctgctagtgcaaattcctaagttgccggacattgacccgctactgcaa
agcaatgcaaagacggcgtcaaatattatggaccgtcctcccataagtgagctggctgga
tga
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