Prunus mume (Japanese apricot): 103321612
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Entry
103321612 CDS
T03196
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum00040
Pentose and glucuronate interconversions
pmum01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103321612
Enzymes [BR:
pmum01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103321612
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
YfkB
DUF5055
Motif
Other DBs
NCBI-GeneID:
103321612
NCBI-ProteinID:
XP_008221658
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Position
LG2:complement(17597242..17600608)
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AA seq
443 aa
AA seq
DB search
MAKLFSSYFLLFFFFLSSAAIIANAETDQPQELDEYWKKRADQAENYTMESYEPNPERVT
DEFNAQVGELIMGKNETRRNLKGQKKYVGPCTVTNPIDACWRCDPNWANNRMKIVDCIQG
FGRKTTGGKGGPIYVVTDPSDGDLVNPRPGTLRHAVIQKGPLWITFARNMVIKLQQELMV
ASDKTIDGRGANVNIFDGACITIQFVKNVIITNIHIKQIKAKEGGMIRDSVDHFGQRTKS
DGDGISIYGSSNIWIDHVSMENCTDGLIDVIMGSTGITISNSHFTKHNEVMLFGASNSYT
QDKMMQITVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSMNPTIISQGNRF
IAGLNSAAKEVTKREYTAEAEWKNWLWKSEGDLFMNGAFFVESGSPANLRADKLDMIPFK
PGTYVTKLTKFAGALDCFVGKPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattatttagctcatatttccttctcttcttctttttcttatcctctgctgca
attattgccaatgccgaaactgatcaacctcaagaattagatgagtattggaaaaaacga
gctgatcaagccgaaaactacaccatggaatcttacgaaccaaatccggagagagtcacc
gacgagttcaatgctcaagttggcgagcttataatggggaaaaacgagacaagaaggaac
ttgaagggtcaaaagaaatatgttggtccatgcacggtaaccaacccaattgacgcctgc
tggaggtgtgaccctaactgggccaacaaccgcatgaagatcgtggactgtatccaaggc
ttcggtcgcaagaccaccgggggtaaaggcggccctatttatgtcgtgactgatccctca
gatggcgacttggtaaaccctagaccgggaaccctgcgtcacgccgtgattcaaaaaggg
cctctttggatcacctttgcgcgcaacatggtgattaagctgcagcaagagctgatggtg
gctagtgacaagaccattgatggtaggggagccaatgttaacatatttgacggtgcttgc
attaccattcagtttgtgaagaatgtgatcatcacaaacattcacatcaaacaaattaag
gccaaagaaggtggaatgatcagagactccgtcgaccatttcggtcagaggaccaagagt
gatggtgatggcatctccatctatggctcctccaacatttggattgaccacgtttccatg
gaaaattgcacagatgggctcatagacgtcatcatgggttccaccggtatcaccatctcc
aattcccacttcactaagcacaatgaggtgatgttgttcggtgccagcaacagctacact
caagacaagatgatgcaaattactgtggccttcaaccactttggtaagggtttggtacag
aggatgccaaggtgccggcacggattcttccacgtggtgaacaacgactacacccactgg
ctcatgtatgccattggtggcagcatgaaccctaccatcatcagccagggtaacaggttc
attgctggtttaaactccgccgccaaagaggtgacgaagagggagtatacggcagaagcg
gagtggaagaattggctttggaaatctgagggagatttgtttatgaatggagcattcttt
gttgaatctggaagcccagccaatttgcgcgcagacaagcttgatatgattcccttcaag
cccggcacctacgtcacgaaattgactaagtttgccggcgctcttgattgctttgtgggc
aaaccatgttag
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