Prunus mume (Japanese apricot): 103321755
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Entry
103321755 CDS
T03196
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103321755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103321755
Spliceosome [BR:
pmum03041
]
Complex C
Other components
Step II factors
103321755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
103321755
NCBI-ProteinID:
XP_008221806
LinkDB
All DBs
Position
LG2:complement(18329944..18333899)
Genome browser
AA seq
590 aa
AA seq
DB search
MDLLRAYSDQNDEELNEPEQQNQNPSSTTSSPDASPPRLLPAKSAAPNVDDTMLALTVVD
GQRSLSRPIDPTQHIVGFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVEDASIEP
FVFDEQYNTFHKYGYAADPSASAGYNYVGDFEALQKNDAVSVYNIPQHEQKKRKIEKRKE
LEEDEGVDDDMDPEEVQNPASDVWLMKNKKSPWAGKKDGPPTELTEEQKKYAEEYAKKKG
EERGGGDKGEVVVEKTTFHGKEERDYQGRSWIAPPRDAKASNDHCYIPKRLVHTWSGHTK
GVSAIRFFPNYGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFNNDGSKFLT
ASYDKNIKYWDTETGQVISTFSTGKVPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNEGK
INQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL
HPNSNWLAAQSMDNQILIYSTREKFQLNKKKRFAGHVVAGYACQVNFSPDGRFVMSGDGE
GRCWFWDWKTCKVFRTLKCHEGVCIGAAWHPLEQSKVATCGWDGLIKYWD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccgagcctactctgatcaaaacgacgaagaattgaacgagccagagcag
caaaaccaaaaccctagttcaacaacatcgtccccagacgcttcaccgcctcggctcctc
cccgccaagtccgccgcgcccaatgtcgacgacacgatgctggccctgacggtggttgat
ggccaacggtctttgagtcggccaattgacccgacccaacacatcgtcggcttcaacccc
acctacgaccaactatgggccccaatctacggcccatctcatccctatgccaaggacggc
atcgcccagggcatgcgtaaccacaagctcggcttcgttgaggacgcctctattgaaccc
ttcgtcttcgatgagcagtacaatacttttcacaagtatggctacgcggccgacccgtca
gcctctgctgggtataattacgttggtgattttgaggccttgcagaagaatgatgccgtt
tcggtatataacataccccagcacgagcagaagaagcggaagatagaaaagaggaaggaa
ttagaggaagatgagggtgtggatgacgatatggacccagaggaggtccaaaacccggcc
agtgatgtgtggttgatgaagaataagaagagcccatgggcaggcaagaaggacggtccg
ccaacggagctcacagaggagcagaagaagtatgccgaggagtatgcgaagaagaaaggt
gaagagagaggtggtggtgataagggtgaggttgtggttgaaaaaactacatttcatggg
aaagaagagagggattatcagggtaggtcttggattgcgccccctagagatgctaaggca
tctaatgatcactgttatattccaaagaggttggtgcacacttggagtggacacacaaag
ggtgtatctgctattagattcttccctaattacgggcatttgattctctctgctgggatg
gataccaaggtgaaaatttgggatgttttcaatactggtaagtgtatgagaacttacatg
ggtcattccaaggcagttcgggatatatgtttcaataacgatgggagtaaatttctgact
gctagttatgataagaatattaagtactgggatacagaaaccgggcaagtgatatctaca
ttctcgaccgggaaggttccatatgtggtcaagcttaacccggatgaggataagcagaat
gtgttgttagctgggatgagtgataagaagattgttcagtgggatatgaacgagggaaag
atcaatcaagagtatgatcaacatttgggtgctgtgaatacgattacatttgttgataat
aaccggaggtttgttacttccagtgatgacaaatcgcttcgagtatgggagtttgggatc
cctgtggttattaagtatataagtgagcctcacatgcattctatgccatcaatttcactg
catcccaattcaaattggcttgcagcacaaagtatggacaatcagattctgatttatagc
actagagagaagtttcagctgaataagaagaagaggtttgccgggcatgttgttgctggg
tatgcttgccaagtcaatttctcgccagatggacggtttgttatgtcgggtgatggtgaa
ggtcgatgctggttttgggattggaagacatgcaaagtcttcagaactctcaaatgtcat
gagggggtatgcattggggctgcgtggcatcccttggagcagagtaaagttgcaacatgc
ggctgggatggcttgattaagtattgggactag
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