Prunus mume (Japanese apricot): 103321983
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Entry
103321983 CDS
T03196
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X2
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103321983
03015 mRNA surveillance pathway
103321983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103321983
03041 Spliceosome [BR:
pmum03041
]
103321983
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103321983
Spliceosome [BR:
pmum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
103321983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
103321983
NCBI-ProteinID:
XP_008222067
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Position
LG1:complement(4164905..4171048)
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AA seq
859 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDTSKVNMEVMRPWIAKRVTDLL
GFEDEVLINFIYGLLEGKVVNGKEVQISLTGFMEKNTVKFMKELWTLLISAQNNASGVPQ
QFLDAKQEEARTKKEEADRFANEIQRKKDKERMEQQEILKKMEGGVDKKSSNIALEPNSK
HMSPRTSNDRSEDERGNEKRNGVKARNKVSRSPNSGNSSLSHSERRRSKSVSKSPKAQRR
SISSERGYRSPPRRPITTLRRHSPEGSLSPRGRSPYSRRRSRSYSPQRSPSPYRRRLRSP
YRHRSPSPGRRRTSPLVRRRRSPSPVRRRRSPSPIRRRRSPSPVRRRRSPSPVRRRRSPS
PVRRRRSPSPLRRRMSPSPVRRRRSRSPVHRRSPSPARRWYRRSPLTSRNRYASPVQRRS
PVRGGRRSPTPRNRSPSPYVRSSASPIQNGSPSPIRGTKYQRSPSQSPQERTRSQFSPVP
RQSSSSPGSLQRESKKEKDSRKRAPDLSPSPEKSRLLSESPPGVRSASEERRSSSPYESP
VRRPREQMTRNVSSSPPRKPREQKLRRGSPEISEEEDGDYRPKSTERRSKNTSVIGKPIV
SPAKVHNKEDYSPERVASGHRSTESRSRLDNMEFRNKEQEMRSGKSSGRGAPGTPEQQKA
ATMSKDSLPGETQQASYPNEGRKTDDKKRSHSKNSKDSDRHHKPGSVHSSVEKVDHINQS
GTFDSGSEESDKCRGGDKEKRKNKRSERQAVTSDDDYSNDSEIEDRKGSKRRRKEEKRLR
KEKKRRRREERRRRKEERRAEKLKGKNYSDASASGGEHVGRRELHSSDHEEAEAIQKKLE
IELRKKALESLKAKKGINH
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggttcttcaggggtacgtccgctgatcaggacacaaggttttccaataag
caagctaagctgttgaaatctcagaagtttgcacctgaattggagcatttggtggataca
tcgaaggtgaatatggaggttatgcgcccgtggattgctaaacgggtaacagaccttctc
gggttcgaagacgaagttcttatcaactttatttatggtcttttggaaggaaaggtagtg
aatgggaaggaagttcaaatttcgcttactggatttatggagaaaaacactgtgaagttt
atgaaagagctttggacgcttcttatcagtgcacaaaacaatgctagtggtgtccctcaa
cagttcttggatgccaaacaagaagaagcacggacaaagaaggaggaggcagacaggttt
gcaaatgaaattcagagaaagaaagataaggagaggatggagcaacaagagatattgaag
aagatggaaggaggggttgataagaaatcaagcaatattgcgttggagccaaactcaaaa
catatgtcaccaaggacttcaaatgatcgttctgaggatgaaagaggaaatgaaaagcgc
aatggtgtgaaggcaaggaacaaggtttcaagatctccaaattcaggaaattcatctctg
tctcatagtgaaagacgtcggtcaaaaagtgtttccaagtcaccaaaagcacagagacgg
tccatttcttcggaaagaggttatcgttctccaccaagacggcctattacgactcttcgg
aggcattcacccgagggatcactctcgccgagaggaagatcaccttattcgaggcgaaga
tctagatcatattccccacaaagatcaccctctccttatcggcgtagattacgttctccc
tatcggcatagatcaccttctcctggtcgtcgtcgaacgtctccacttgttagacgtcgg
agatcaccctcacctgtccgacgccgcagatcaccctcacctatccgacgtcgcagatca
ccctcacctgtccgacgtcgcagatcaccctcacctgtccgacgtcgcagatcaccctca
cctgtgcggcgtcgcaggtcaccctctcctttgcgacgtcgcatgtcaccttctcctgta
agacgtcgcagatcccgctcacctgtgcatcgcagatctccctcacctgcacgacggtgg
tatcgaagatctccattgacttcacgcaacaggtatgcatctccagtgcaacgtaggtca
ccggttcgtggtggtaggagatcaccaactcctcggaataggtctccttcaccttatgtc
cgaagttctgcatctcctattcagaatggttccccttcaccaatcaggggaacaaagtat
cagagatctccgtcacaatctcctcaagaaagaaccaggtcccaattttctcctgtgcca
cgtcagtcctctagctctcccggatcactgcagagggagtcaaagaaagagaaagattcc
cgtaaaagagcaccagatttgtcgccatcaccagagaagtctcgcttactgtcagaatct
ccaccaggtgtaaggagtgctagtgaagaaaggagatcctctagtccttatgagagtccg
gtgcgacgaccaagggagcaaatgactcgtaatgttagctcaagtcctccaaggaaacca
agagaacaaaagcttcgtcgtggaagtccagaaataagcgaagaggaggatggcgattat
agacctaagtccacagagagaagatcaaaaaatacatcagtgatcggtaagccgatagtt
tctcctgctaaggttcataacaaggaagactactctcctgaaagagtagcatctggtcat
agatctactgaatctcggagtcgtctggataatatggaattcagaaacaaagagcaggag
atgaggagtgggaaatcctctgggaggggggctcctggaactcctgagcaacaaaaagca
gcaaccatgtcaaaggactctctacctggtgagactcaacaagcatcatatcctaatgaa
ggtagaaagactgatgataagaaacgctctcattcgaagaattccaaggacagtgaccgg
catcacaaacctggatctgtacactcttcagttgaaaaggttgatcatattaatcaaagt
ggcacttttgattctggttctgaggaaagtgacaaatgcagaggtggggataaggaaaaa
agaaagaataagagatcagagaggcaagcagtgacttcagatgatgattacagtaatgat
tctgaaatagaagacaggaagggctctaaaaggaggaggaaagaggaaaagagattgcgg
aaggagaagaagcgccgaagacgtgaggagcgacgccgcagaaaagaagaacgtcgtgca
gagaagctgaaaggaaagaattacagtgatgcttctgcttcaggtggtgaacatgtaggc
aggagggagcttcattcaagtgaccatgaagaggcagaggctattcagaagaaacttgag
attgagttacgcaagaaggctctcgaatcacttaaagcaaagaagggcatcaatcactaa
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