Prunus mume (Japanese apricot): 103322034
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Entry
103322034 CDS
T03196
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103322034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103322034
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103322034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Tox-HDC
Motif
Other DBs
NCBI-GeneID:
103322034
NCBI-ProteinID:
XP_008222119
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Position
LG2:20473213..20477790
Genome browser
AA seq
299 aa
AA seq
DB search
MVLPDASGDVLSEMDVDAFRRLFPLRFFETHLVKSTRPDGRSLAEARETSSALGAVASAD
GSALVKIGSTRMLAAIKMEVMTPSKESPDEGCIAIDFHMPPICSPTVRPGRPAEAAPVVS
KQLSDTILSCGMINLKELSLISGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIP
VVSMNDDGKVVVLSGDHGGKEPVNKGKRKLTLSSIPFSLTCLLHKNYILADPTAEEESVM
ETLVTVVLDSSGQLVSLYKPGGPVLAYTSAIQDCVALTRQRARELQTILDEVTSGMEVD
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgccagatgcttctggggatgtgctgtcagaaatggatgtggatgcttttaga
cgcctgtttcctcttcgttttttcgagactcatcttgttaaatctacacgacctgatggc
aggtcactagccgaagctagagagacttcttcagcccttggggctgttgcatctgctgat
ggctcagcattagtaaagattggttcaactagaatgttggctgctataaaaatggaggtc
atgaccccttcaaaagagtcaccggatgagggttgcatagcaattgatttccacatgcct
ccaatttgctccccaactgttaggcctggcaggccagctgaggcagcacctgtggtgtcg
aagcagttatctgacactattttaagttgtggcatgattaatttgaaggagttatccttg
atcagcggaaaggctgcttggatggcctacctggacatatattgtttggatgctgatggt
gctcttttcgatgctgctttgctgtcagcggttgctgccttttctcacttgcagattcct
gtagtttctatgaatgatgatgggaaagtagtagttttgtctggagatcatggaggaaag
gagccagtcaataaagggaagaggaaactcacattaagcagtattccattttcattaaca
tgcttgcttcataagaattacatcttggctgaccctaccgcagaggaagagtctgtaatg
gaaactcttgtaactgtggttttggattcatctggtcaacttgtgtctctttacaagcca
ggtggacctgttcttgcctatacatcagctatccaggattgtgttgcactgactaggcaa
agagcgagggagcttcaaacgatcttagatgaagtcacctccggtatggaggttgattag
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