KEGG   Prunus mume (Japanese apricot): 103323618
Entry
103323618         CDS       T03196                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103323618
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmum03041]
    103323618
Spliceosome [BR:pmum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    103323618
 Complex C
   U5 SnRNP specific factors
    103323618
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_EIPR1 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Nbas_N PEP5_VPS11_N RMC1_N
Other DBs
NCBI-GeneID: 103323618
NCBI-ProteinID: XP_008223841
LinkDB
Position
LG2:36678599..36682440
AA seq 344 aa
MMQFAPSEGETALSVVGPRPMELSTHSARPAPGPNGKQRTSSLESPIMLLTGHQSAIYTM
KFNPAGTVVASGSHDKEIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDKT
VGAWDVETGKRIKKMAEHSSFVNSCHPARRGPPLIVSGSDDGTAKLWDMRLRGAIQTFPD
KYQITAVSFSDASDKIFTGGIDNDIKVWDLRKAEVMMTLQGHQDMITGMALSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
DTTSRRILYMLPGHTGSVNESVFHPTEPIIGSCGSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgatgcaatttgctccaagtgagggtgaaactgctttgtctgtagttggtccaaggcca
atggagttgtccacgcatagtgctcgtccggcacctgggccaaatggaaaacaaaggact
tccagtttggaatcgccaatcatgttgttgacaggtcatcagagtgctatatacacaatg
aaatttaatcctgctggaacagttgttgcatctgggtctcatgacaaagaaattttctta
tggaatgttcatggggaatgcaagaactttatggttttgaaggggcacaagaatgctgta
ttggatcttcactggacaactgatgggtctcagataatatcagcaagtccagacaagact
gtgggggcatgggatgttgaaacagggaaaagaataaaaaagatggcagaacactcatca
tttgtgaattcttgccatcctgctcgaaggggaccacctcttattgtcagtggatctgat
gatggaactgccaaactatgggatatgcgtctgaggggtgccatccaaacatttcccgat
aaatatcaaattacagctgtcagtttctctgatgcatcagataaaatctttaccggaggc
attgacaatgatattaaagtttgggatttgcgcaaggctgaagtaatgatgacacttcaa
ggccatcaagatatgataacaggtatggcattgagtcctgatggctcttatcttctgact
aatggaatggactgcaagctctgcatttgggatatgcgcccatatgcaccacagaatcgt
tgcgtgaagataatggaagggcaccagcacaattttgaaaagaacttgttgaaatgtagc
tggtcccctgatggaagcaaggtcacagcgggaagttctgatcggatggtttatgtttgg
gatactacttctcgacgcatcttgtatatgcttcctggccacactggatctgtcaatgag
tctgtattccatcccactgaacccattattggatcttgcggtagtgataaacagatctat
ctgggagaaatctga

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