Prunus mume (Japanese apricot): 103323711
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Entry
103323711 CDS
T03196
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103323711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103323711
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
103323711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
EIF3I
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_VPS8
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR75_2nd
PEP5_VPS11_N
Beta-prop_LRRK2
Beta-prop_IP5PC_F
Beta-prop_SCAP
WD40_like
VID27
Motif
Other DBs
NCBI-GeneID:
103323711
NCBI-ProteinID:
XP_008223940
UniProt:
A0ABM0NFB8
LinkDB
All DBs
Position
LG2:complement(37454876..37466510)
Genome browser
AA seq
905 aa
AA seq
DB search
MGIFEPFRAIGYTTGSVPFSVQRLGTETFVTVSVGKAFQIYNCAKLSLVLVGPQLPKKIR
ALASYRDYTFAAYGNDIAVFKRAHQVATWSSHNAKVNSLLLFGEHILSVDIEGNLFIWAF
KGIDQNLSPVGHITLENNFSPSCIMHPDTYLNKVIIGSQEGPLQLWNISTKKKLYEFKGW
KSSICSFVSSPALDVVAVGCADGKIHVHNIRYDEELVTFAHSTRGAVTALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIRDAHDGSILSLHFFVNEPVLMSSSSDNSIKMWIFDTS
DGDPRLLRFRSGHSAPPQCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR
AKKMRMKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPR
PENPSPVKACAISACGNFAILGTADGWIERFNLQSGMSRGSYVDTSARRSFAHDGEVVGI
ACDSTNTLMISAGYHGDIKVWNFKGRDVKSRWEVGCSVVKIVYNRLNGLLAVVADDLIIR
LFDVVASRIVRKFEGHTDRVTDMCFSEDGKWLLSSSMDGSLRVWDVILARQIDALHVDVS
ITALSLSPNMDVLATAHVDQNGVYLWVNQSMFSGASKVDSYASGKEVVSVKLPSVSSTKG
SQDEDFDEPIVDNPQSKDASAFTTRDLQIPDLVTLSLLPKSQWQSLINLDIIKERNKPIE
PPKKPERAPFFLPSVPSLSGDILFKPSGSAEEEAKGDEVEDTRIKSGLAPSQFVQLLHSS
AEMKNFSAFTDYIKSLSPSTLDMELRMLQIVDDDEQEPEKRPELFSIELLLDYFIHETSC
RNNFDFVQAVIKVFLKIHGETIRCQSRLQDKARKLLDIQSKTWQKVENLFQSTSCVVAFL
SNSRF
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgggaatattcgagccgttcagagcaatcggctacacaaccggctctgtgccattctct
gttcagaggctcggcactgagaccttcgtcacggtcagcgtcggcaaggccttccaaatt
tacaactgcgcaaagctcagtctggtccttgttggtccacaattgccgaagaagattcga
gctcttgcttcctaccgtgattatacatttgctgcgtatgggaatgatatagccgttttt
aagcgagctcatcaggtagcaacatggagcagccataatgctaaggtcaattcgttgcta
ttgtttggagagcatatcctaagtgttgatattgaaggcaatctatttatatgggctttt
aaaggaattgatcagaatctttctcccgtcggccatatcacgttagagaacaactttagt
cctagctgtataatgcatccggatacctacctaaataaggttattattgggagtcaagaa
ggtcctctacaactttggaatatcagcacaaagaaaaaactctatgagtttaagggatgg
aaatcttctatctgcagttttgtttcatctcctgcactagatgttgttgcagttggttgt
gctgatggaaaaattcatgttcacaacattcgttacgatgaagagctagtcacgtttgct
cattcgacacgcggtgctgtgactgccttatctttcagcaccgatgggcagcctctttta
gcatctggaggttcttctggtgtcataagcatatggaatcttgaaaaacgaaggcttcaa
tcagttataagagatgctcatgatggttccatactttcacttcacttttttgtgaatgaa
cctgtgttaatgagttcctcatcagacaattctattaaaatgtggatttttgacacaagt
gatggagatcctcgtcttttacgctttagaagtggtcatagtgctcctccacaatgcatc
aggttttatgcaaatgggagacacattctatctgctggtcaggatcgtgcctttcgcctt
ttctctgtaatccaggatcaacaaagtagagaactttctcaacgccatgtatccaaacga
gcaaagaaaatgaggatgaaggaagaagagataaaactgaagcctgtgatagcttttgat
tgtgctgaaataagagagcgagattggtgcaatgtggttacatgccatatggatactgca
caggcatatgtgtggcgacttcaaaactttgttcttggtgagcatattctgaagccaaga
cctgaaaatcccagtcctgtgaaggcctgtgccatcagtgcatgtggcaatttcgccatt
ctggggacagcagatggttggattgagcgcttcaaccttcagtcaggaatgagccgaggc
agttatgtagacacgtcagcaagaagaagctttgcccatgatggggaagtggttggaatt
gcttgtgattcaacaaatactctaatgataagtgcaggatatcatggagacataaaggtt
tggaatttcaagggacgtgacgtaaaatctagatgggaagttgggtgttctgttgtcaag
attgtatacaatcgtttgaatggtcttttggctgttgtggctgatgacttaattatccgc
ttgtttgatgttgtggcatcaagaattgttcgtaaatttgaaggccatacggatcgtgta
acagacatgtgttttagtgaggatggaaaatggcttttgtcatccagtatggatggaagt
cttcgagtttgggatgttattttagcaagacaaatagatgcattgcatgttgatgtgtct
ataacagcattgtctctgtcaccaaatatggatgttctagcgactgcacatgttgatcaa
aatggggtctatctttgggtaaatcaatcaatgttttctggagcttcaaaggttgattct
tatgcaagtggaaaggaagttgtgagtgttaagttaccatctgtctcttcgacaaaaggt
tctcaagatgaggactttgatgagcctattgtggacaatccacaatctaaagatgcttca
gcttttacaactcgtgacctgcaaattcctgatcttgttactctctcattattacctaaa
agccagtggcaaagcttaatcaatttagacatcataaaggaacgaaataaaccaattgaa
ccaccaaaaaaacctgaaagggctcctttctttttgccttcagtcccttctctttccgga
gatatattatttaaacccagcgggtcagcggaagaggaagccaaaggtgatgaagtagaa
gacactagaataaagtctggtctggcaccatcgcaatttgtgcaacttcttcactcgtct
gcagaaatgaagaatttttcagcatttactgattatatcaaaagtttatctccatcaact
ctggatatggaacttcggatgcttcaaattgtagatgatgatgagcaagaacctgaaaag
aggccagaattattttcaatcgaactgcttcttgattattttatacacgagacttcgtgc
agaaacaattttgactttgtacaagctgtcatcaaggtgtttctgaagatccatggcgaa
acaattcggtgccaatcaagactgcaggataaggcaagaaagctcctagatattcagagc
aaaacatggcagaaagtagaaaatttgtttcagagcactagttgtgtggtagcttttctt
agcaactcacggttttga
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