Prunus mume (Japanese apricot): 103323719
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Entry
103323719 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103323719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103323719
03041 Spliceosome [BR:
pmum03041
]
103323719
03009 Ribosome biogenesis [BR:
pmum03009
]
103323719
03016 Transfer RNA biogenesis [BR:
pmum03016
]
103323719
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103323719
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103323719
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103323719
Complex C
U4/U6.U5 tri-SnRNP related factors
103323719
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
Helicases
103323719
Transfer RNA biogenesis [BR:
pmum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103323719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
103323719
NCBI-ProteinID:
XP_008223951
LinkDB
All DBs
Position
LG2:complement(37558566..37568558)
Genome browser
AA seq
988 aa
AA seq
DB search
MEESPTVAKRKEPEASEITENPIHESPQKRRHLTRTCVHEVAVPSEYTSTKDESVHGTLS
NPVYNGKAAKTYEFTLDPFQQISVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREENFVKLHDTFSKQKSDGHRSSNGK
ASGRTAKGGTASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQEEK
DDVEHVFRKAVLCLNEEDRQLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII
MIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQHE
KALPDIGKKVSNLEQEVAILDASGEAEVAEYHKIKLDIAQLEKKMMTEITRPERVLYFLL
PGRLVKIREGGTDWGWGVVVNVVKKPSSTLGSLPSRGGGYIVDTLLHCSPGSSENSSQPK
PCPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPLEARQSILLAVQELGTRFPQGL
PKLNPVKDMGIEDPEIVELVNQIEALEQKLYAHPLHKSQDVQQIKCFQRKAEVDHEIQQL
KSKMRESQLQKFRDELKNRSRVLKKLGHIDTEDVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQIAALASCFIPGDKSNEQIQLRTELARPLQQLQESARRIAEIQHECKLEVNV
DEYVESTVRPYLMDVIYCWSKGASFADVTQMTDIFEGSIIRSARRLDEFLNQLRTAAHAV
GEVALEEKFAGASESLRRGIMFANSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccaacggttgcgaaacgaaaagagcctgaagcgtcagagatcacagaa
aaccccatccatgaatctccccagaagcgacgccatttgacccgaacatgtgtgcatgag
gttgcagttcccagtgagtacacttcgaccaaggatgagtcggttcatggaaccctctca
aatcctgtgtataatggcaaggcggccaagacatatgaatttacccttgacccatttcag
cagatatctgtggcatgcttagaaaggaatgagtcggttttggtttctgcccatacttca
gcaggtaagactgcagtcgcagagtatgcaattgccatggcttttagagataagcagagg
gttatatatacttcaccactgaaggctttgagcaatcagaagtatagagagctcagccag
gagtttaaagatgttggattgatgactggagatgttacaatctcacctaatgctagttgt
ttggtcatgacaactgagatccttaggggaatgctttacaggggttcggaggttttaaag
gaagttgcctgggttatctttgatgaaattcattacatgaaggatcgcgaaagaggggtt
gtttgggaagagagtattatatttatgcctccagctgttaaaatggtttttctttcagcc
acaatgtccaatgccactgagtttgcagagtggatttgtaatttgcacaaacagccttgc
catgtggtgtacacagattttcgaccaactcctctgcagcattacgtttttccagtgggt
gggaatgggttgtatcttgtggtggacgagaatgaacagttcagggaggaaaattttgtg
aagctgcatgatactttttcaaagcagaaaagtgatggtcacaggagttcaaatggcaag
gcaagtgggagaactgcaaaaggtgggactgcatctgggggttctgatatcttcaaaatt
gttaagatgataatggaacggaaatttcagccagttataattttcagcttcagtagaaga
gagtgtgaacaacatgcgatgtccatgtctaagcttgattttaacacccaagaagaaaag
gatgatgttgaacatgtttttcgtaaggcagtgctctgcttaaacgaggaagacaggcag
ttgcctgctattgagttaatgttgccactccttcagcgaggcattgctgttcatcattct
ggccttcttcctgttatcaaggaactggttgaacttcttttccaggaaggccttgtaaag
gccctttttgctactgagacatttgcaatgggattaaacatgccagcaaaaactgttgtt
ttcacagctgttaagaagtgggatggtgatagtcatcgatatataggatctggtgagtac
attcagatgagtggaagggctgggcgtcgtggcaaagatgatcgtggtatttgtatcata
atgattgatgagcagatggaaatgaacacactcaaggacatggttttgggtaaaccagct
cctttagttagtactttcagactcagctactactcaattttaaatttgctgagccgtgca
gaaggccaattcacagctgaacacgtgataaagaattcattccaccaatttcagcacgaa
aaggctttacctgatatagggaaaaaggtttcaaatcttgagcaggaagtagcaatactt
gatgcgtcaggagaggctgaagttgctgagtatcataagataaaacttgatatagcccaa
cttgaaaagaaaatgatgacagagataacgaggcctgaaagagttctatattttcttctt
cctggtcgcctggtcaagattagggaaggtggtacagattggggctggggagttgtagtt
aatgtggttaaaaagccgtcatccacattaggctcactgccttcacgcggtggtggttat
atagtggatactttgcttcactgttctcctggttcaagtgagaacagttcacaaccaaaa
ccatgccctcctcgtcctggagaaaagggtgaaatgcatgtagtccctgtccaattgccc
ctgatttctgctctaagcaaactcagaatatccattccttctgatttgcggccattggag
gcgaggcaaagtattctgcttgcagtccaggagctgggaactcgttttccacaaggcctt
ccaaagctgaatcctgtaaaggatatgggcattgaagatcctgaaattgttgagttggtt
aatcaaatagaggcccttgaacagaaattatatgcacatccgctgcataagtctcaagat
gttcagcagattaaatgttttcaacggaaagcagaggtggatcatgaaattcaacaactt
aagtccaagatgcgtgagtcccagcttcaaaagtttcgtgatgaacttaagaaccgttcg
cgagtattgaagaagcttggtcacattgatactgaggatgttgtccagttaaaggggcga
gcagcctgcttgatagacacgggagatgaactccttgttactgaactgatgtttaatggt
acgttcaacgatttggatcatcatcaaatagcggctcttgcaagttgttttattccagga
gataaatcgaatgagcagatacaattgaggacagagcttgctagaccattacaacaactc
caagagagtgcaagaagaatcgcagagatacaacatgaatgcaaattagaagtgaacgtt
gatgagtatgtggaatcaacagtgaggccatacttgatggatgtgatttattgttggtcg
aagggtgcaagttttgcggatgttacacaaatgacagatatatttgagggtagtatcatt
agaagtgctagaagacttgatgaatttttgaatcagttgcgtactgccgctcatgctgta
ggagaagttgctttagaggagaaatttgctggagcaagtgaaagccttcggcgaggtatc
atgtttgcgaactccctttatctgtag
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