Prunus mume (Japanese apricot): 103324027
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Entry
103324027 CDS
T03196
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103324027
03036 Chromosome and associated proteins [BR:
pmum03036
]
103324027
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103324027
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103324027
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
103324027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
DEAD
PhoH
Helicase_RecD
SLFN-g3_helicase
ATPase_2
MOV-10_Ig-like
AAA_16
AAA
SNF2-rel_dom
LTD
Mg_chelatase
AAA_24
DAP3
AAA_5
Motif
Other DBs
NCBI-GeneID:
103324027
NCBI-ProteinID:
XP_008224284
LinkDB
All DBs
Position
LG2:39889674..39894138
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AA seq
898 aa
AA seq
DB search
MGINGYKSDEECSVIGDKGEIGFIDFEDDKSVRSYNPNEEGPIVISVPFPYVGGKQGEKP
QSVCVGETTVDKITIKNTTHDPVELCGVKIYASSPEDSFKLSLMKPPTADSDVETIQAFL
ESTSLEDRMLQPGDTLTIWLSCKPKEIGQHKAFVLFDLETEQIERVVILLAEDKISQSMA
STKPYTRATRKKPLLVDGFHVGVRPSGVTDRRPYKNRLPRYDIPKDIRELLESKQIPYVV
TEGLTRGNYAHYFKNLLIMEEIQIEESMRSHDMVGVTLRKRGPQFLSLEVPGLAERRPSL
VQGDYVLAKLSEYADDTVPPYQGYIYRVEADDVYLKFPPEFHACHRDGNLYSVQFTFNRI
TMRRLYQAVDAAEKLEIMFLFPSESYQRRMIRGTRLVPISCTPNKEQMCSVEMILGCKGG
PPYVIYGPPGTGKTMTLVEAILQLYATRKNTRILVCAPSNSAADHILEKLLNAKAGTAVR
ENEIFRLNASSRPYEDVNPNHIDFCFFDDDTFKCPELRVFVRYRIIISTYMSASLLHAEG
VPRGHFSHIILDEAGQASEPETMIPISNLYHRNTVVVLAGDPKQLGPIINSSQAESFGLG
RSYLERMFECEFYSNGDKSYVTKLVRNYRCHPEILYLPNMLFYGQELIACKDDSVPFMAR
VDLLPNKDFPVLFFGIEGCDEREGSNPSWFNRTEASKVVEVTKRLTAKRNLSEEDIGIIA
PYRQQVLKLKKAFENLEMPNIKVGSVEQFQGQERQVIIISTVRSTIKHDEFDRRYCLGFL
SNPKRFNVAITRAKALLIVIGNPHIISKDPNWNRLLWRCADNSSYLGCNPPERQELVYED
PQEDLLNNEGNTWCSGDDGWARDSWQTEVPQPVMEKSWQTEAPQPVVDDEAEWSDGWK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgggtataaatggttataagtcggatgaggaatgctctgtcattggagacaaaggagaa
atcggcttcatagatttcgaggatgataaatcggtgcgtagttacaacccaaatgaagaa
ggtccaattgttatttcagtcccattcccttatgtgggtggaaagcaaggagaaaagcct
caatcagtatgcgtaggagaaacaactgtggataagataactattaagaacaccacccat
gacccggtggagctatgcggtgttaaaatttacgcctcaagtccagaggactctttcaag
ctttctctgatgaaacccccaactgcagactctgatgtcgaaaccatccaagccttcctt
gagtctacttctctggaggacagaatgcttcagccaggagatacattgactatatggcta
tcttgcaaacccaaggaaattggtcagcacaaggcctttgtgctttttgatttggagact
gaacagattgaacgagttgttattctcttagcagaagataaaatatcccaatctatggcc
tcaacaaaaccatacacaagagccactagaaagaaaccacttcttgtggatggttttcat
gtgggtgtacgccctagtggagtaacagaccgacgaccgtacaagaataggcttcctcga
tacgacattccaaaagacatcagagaattacttgagagcaagcagattccttatgttgtc
accgaaggtcttacgagagggaactatgcacattacttcaaaaatttactcatcatggag
gaaatacagatagaggaaagtatgagaagccatgatatggtaggtgttactttgaggaag
agaggacctcaatttttgtcccttgaagtcccagggcttgctgagagaaggccttcactt
gtccaaggggattatgttttggccaaactttctgagtatgcagatgatacagttcctccg
tatcagggttatatctaccgtgttgaggctgatgatgtatacttgaagtttcctccagaa
tttcacgcatgccacagagatggtaacctttatagtgtacaatttacatttaatcgaatc
accatgagaaggttatatcaagcggttgatgcagcagaaaaattagagataatgttcctt
tttccatctgagtcctatcaaagaaggatgattagaggcactcgactggtgcctatatct
tgtacacctaataaggagcagatgtgctcagttgagatgatccttggctgcaaaggaggg
ccaccttatgtgatttatggtcctcctggaacaggcaagactatgacattagtggaagca
atcctccaactctatgcaactcggaagaatactagaatccttgtgtgtgcaccttcaaat
agtgcagcagaccacattctggaaaaactcctcaatgcaaaggctggtacagcagttcga
gagaacgaaatattcaggctcaatgcatcttcccgtccttatgaagatgtcaatcctaac
catattgacttctgcttctttgatgacgataccttcaagtgtcctgaactccgtgtcttc
gtgcgctataggatcatcatatcaacctatatgagtgcctctttgcttcatgcagaaggt
gtcccacgaggccacttctctcatattatcttggatgaggcaggccaagcttcagaacca
gaaaccatgatcccgatatcgaatctctaccatcggaatacagtagttgttcttgctgga
gaccctaagcaattaggtccaatcataaactccagccaagcagaatcctttggtttgggg
agatcatacttggagagaatgttcgaatgtgagttttatagtaatggggataaaagctat
gtaacaaaattggttagaaattatcgatgccacccagaaattttgtatctccctaatatg
ttgttctatggacaagagttgattgcttgtaaagatgactcagttcccttcatggcaagg
gtggaccttcttcctaacaaggatttccctgttcttttctttggcatcgaaggctgtgat
gagagggaaggaagtaatccatcgtggtttaatcggactgaggcaagtaaggtagtagag
gtcactaagcgattgactgcaaaaaggaatttgagtgaggaagatattgggatcatagca
ccttaccggcagcaagtactaaaactgaagaaggctttcgaaaatttggagatgcctaac
atcaaggttggaagtgttgagcaatttcagggacaagagagacaagttataataatatca
actgtccgatcaacaatcaaacacgatgaatttgacagaagatactgtttgggatttttg
agcaatccaaaaaggtttaatgtggctattactcgtgctaaagctttgctaattgtaatt
gggaatccgcacatcatcagcaaggacccaaactggaacaggcttctatggcgttgtgca
gacaactcatcctatctgggctgtaacccccctgagaggcaggagcttgtttatgaggac
ccacaggaagatctcttaaacaatgaaggaaacacttggtgctctggagatgatggatgg
gctcgagactcctggcaaacagaagttccccaacctgtcatggaaaagtcctggcaaaca
gaagctccccaacctgtcgtggatgatgaagctgaatggtctgatggctggaagtaa
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