KEGG   Prunus mume (Japanese apricot): 103324381
Entry
103324381         CDS       T03196                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03020  RNA polymerase
pmum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103324381
  09124 Replication and repair
   03420 Nucleotide excision repair
    103324381
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmum03021]
    103324381
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103324381
Transcription machinery [BR:pmum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     103324381
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103324381
SSDB
Motif
Pfam: RNA_pol_Rpb4 HSM3_C
Other DBs
NCBI-GeneID: 103324381
NCBI-ProteinID: XP_008224649
LinkDB
Position
LG3:184754..187970
AA seq 226 aa
MSEKGGKGFSLPTGKAVKSSLKSTPSTKDASLKGKDDSSTKSKKGRKVQFDSEGLHEPKS
NFSSKFDNPAAASGKADWGKGGKGDKVGNGRKKEPQPLELKIEQELPQSAKCLMDCEAAD
ILQGIQEQMILLSKDPTIKIPVSFDKGLQYAKRTSHYTNPQSVRKVLETLTKYGVSDGEI
SVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSELTKLKQST
NT seq 681 nt   +upstreamnt  +downstreamnt
atgtcggagaaaggaggaaaagggttttctttgcctactggcaaagcagtaaaatcttca
ctgaaatctaccccttctacaaaggatgcttccttgaaagggaaagatgatagctcaaca
aagtccaagaaggggagaaaagtccagttcgattctgaaggtttgcatgaacccaaatcc
aacttctcgtcaaaatttgataacccagctgctgcctcagggaaagctgattggggcaaa
gggggaaaaggagacaaggttggaaatggcagaaagaaagaaccacagccactggagctc
aaaattgagcaggaactgccacagagtgccaaatgtctgatggattgtgaggctgcggat
atactacaaggaatccaggagcaaatgatcctgttgtctaaagatcctactattaaaatc
cctgtatcatttgacaagggactgcagtacgccaaaagaaccagccactataccaatccc
caatctgtcagaaaagttcttgagactctcacaaaatatggtgtctcagatggcgagata
agtgtgattgccaatgtttgtcccgaaaccactgatgaagtttttgctctagtaccatcc
ttgaagactacgagaagcgtgctcagccaaccgctcaaagaagtcttaagtgagctaact
aagcttaaacagtctacataa

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